Wall clock time and date at job start Sun Mar 29 2020 21:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.38222 * 120.38108 * 95.00247 * 13 12 11 15 15 C 1.39379 * 118.47481 * 180.02562 * 14 13 12 16 16 O 1.35511 * 120.48120 * 179.97438 * 15 14 13 17 17 N 1.32787 * 119.04199 * 359.97438 * 15 14 13 18 18 C 1.32274 * 120.66672 * 0.02562 * 17 15 14 19 19 O 1.35452 * 119.16592 * 179.97438 * 18 17 15 20 20 N 1.32324 * 121.66952 * 359.71271 * 18 17 15 21 21 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 23 23 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 24 24 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 25 25 H 1.08005 * 120.76242 * 359.97438 * 14 13 12 26 26 H 0.96704 * 114.00229 * 89.99488 * 16 15 14 27 27 H 0.96702 * 113.99947 * 90.00411 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.5694 -6.6602 1.1918 15 6 3.4782 -7.7160 1.1475 16 8 3.8727 -8.3317 2.2884 17 7 3.9519 -8.1099 -0.0288 18 6 3.5698 -7.5113 -1.1447 19 8 4.0726 -7.9375 -2.3280 20 7 2.7048 -6.5099 -1.1349 21 1 -0.4851 0.8400 -0.0004 22 1 2.9191 -3.6476 0.0027 23 1 0.5889 -4.9739 0.8903 24 1 0.5910 -4.9743 -0.8897 25 1 2.1668 -6.3169 2.1334 26 1 3.3186 -9.0825 2.5420 27 1 3.5500 -8.6334 -2.7496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640014001.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:53 Heat of formation + Delta-G solvation = -61.330902 kcal Electronic energy + Delta-G solvation = -16080.831935 eV Core-core repulsion = 13033.170548 eV Total energy + Delta-G solvation = -3047.661387 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.40733 -38.34147 -37.68396 -36.82978 -34.27001 -32.73695 -32.15364 -30.87921 -27.57945 -25.59139 -24.16634 -22.63357 -19.84680 -19.54785 -18.57588 -17.85012 -17.27787 -16.52205 -15.66316 -15.39764 -14.90011 -14.60095 -14.20293 -13.48341 -13.38633 -12.96100 -12.53893 -12.10832 -12.02338 -11.46811 -11.22933 -11.02663 -10.94241 -10.67320 -10.48865 -10.25079 -9.54329 -9.35764 -8.88617 -7.70676 -7.66049 -6.23283 -4.68699 0.60030 0.73961 2.64766 3.13686 3.20458 3.23820 3.39126 3.43883 4.07254 4.15680 4.53484 4.69165 4.87639 4.94333 5.14190 5.30622 5.70195 5.86637 6.09605 6.24468 6.66848 7.08134 7.27537 7.40305 7.79235 7.85625 7.94808 8.26423 8.98391 9.40698 10.53007 10.70963 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.005010 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.465597 B = 5587.229483 C = 5705.854328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.578 6.578 11 N -0.759 5.759 12 C 0.179 3.821 13 C 0.211 3.789 14 C -0.235 4.235 15 C 0.378 3.622 16 O -0.472 6.472 17 N -0.554 5.554 18 C 0.515 3.485 19 O -0.455 6.455 20 N -0.514 5.514 21 H 0.269 0.731 22 H 0.382 0.618 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.162 0.838 26 H 0.408 0.592 27 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.570 -14.939 1.890 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.417 5.417 12 C 0.053 3.947 13 C 0.065 3.935 14 C -0.259 4.259 15 C 0.191 3.809 16 O -0.280 6.280 17 N -0.291 5.291 18 C 0.210 3.790 19 O -0.258 6.258 20 N -0.241 5.241 21 H 0.080 0.920 22 H 0.214 0.786 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.179 0.821 26 H 0.267 0.733 27 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.728 -14.375 1.109 15.173 hybrid contribution 0.174 0.148 0.626 0.667 sum 4.902 -14.226 1.735 15.147 Atomic orbital electron populations 1.70009 1.07055 1.27419 1.35051 1.25706 0.94657 1.00328 0.92550 0.86338 0.80124 0.81198 0.78909 1.19677 1.20410 1.18888 1.20847 0.93666 0.89075 1.54289 0.91313 1.18252 0.87205 0.82028 0.76348 1.90608 1.13958 1.86406 1.55050 1.46165 1.08693 1.03573 1.83233 1.19858 0.91025 0.80671 1.03134 1.21864 0.91927 0.93432 0.86245 1.22910 1.00995 1.00158 1.01860 1.19058 0.87534 0.90009 0.84311 1.84760 1.57902 1.49785 1.35517 1.67318 1.28472 1.34298 0.99019 1.19861 0.86870 0.87405 0.84840 1.84749 1.51809 1.59199 1.30035 1.67952 1.11237 1.13107 1.31848 0.91998 0.78649 0.90548 0.90473 0.82067 0.73278 0.72987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.70 11.83 55.55 0.66 -22.05 15 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 15 3 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 15 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 7 C -0.54 -15.22 9.54 -35.64 -0.34 -15.56 15 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 15 9 C 0.56 15.61 7.75 -12.99 -0.10 15.51 15 10 O -0.58 -18.25 15.02 5.20 0.08 -18.17 15 11 N -0.76 -16.85 5.54 -62.90 -0.35 -17.20 15 12 C 0.18 3.28 6.02 -5.20 -0.03 3.25 15 13 C 0.21 3.25 6.18 -82.33 -0.51 2.74 15 14 C -0.24 -3.01 9.78 -39.16 -0.38 -3.39 15 15 C 0.38 4.75 7.83 -16.71 -0.13 4.61 15 16 O -0.47 -4.65 13.57 -18.22 -0.25 -4.90 15 17 N -0.55 -7.84 10.49 -14.79 -0.16 -8.00 15 18 C 0.52 7.51 8.71 -91.28 -0.80 6.71 15 19 O -0.45 -5.58 13.64 -18.05 -0.25 -5.82 15 20 N -0.51 -8.28 10.40 -11.01 -0.11 -8.39 15 21 H 0.27 7.22 8.29 -40.82 -0.34 6.88 15 22 H 0.38 7.85 8.44 -40.82 -0.34 7.51 15 23 H 0.08 1.34 8.06 -51.93 -0.42 0.92 15 24 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 25 H 0.16 1.73 8.06 -52.48 -0.42 1.31 15 26 H 0.41 1.63 9.06 45.56 0.41 2.04 15 27 H 0.41 2.59 9.06 45.56 0.41 3.00 15 LS Contribution 259.65 15.07 3.91 3.91 Total: -1.00 -37.37 259.65 -4.20 -41.57 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -0.33 Total: 7.79 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: -2.39 Total: 16.21 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.04 Total: -55.63 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.42 Total: -28.89 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -37.37 -4.20 -41.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640014001.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.759 kcal (2) G-P(sol) polarization free energy of solvation -37.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds