Wall clock time and date at job start Sun Mar 29 2020 21:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.38222 * 120.38108 * 95.00247 * 13 12 11 15 15 C 1.39379 * 118.47481 * 180.02562 * 14 13 12 16 16 O 1.35511 * 120.48120 * 179.97438 * 15 14 13 17 17 N 1.32787 * 119.04199 * 359.97438 * 15 14 13 18 18 C 1.32274 * 120.66672 * 0.02562 * 17 15 14 19 19 O 1.35452 * 119.16592 * 179.97438 * 18 17 15 20 20 N 1.32324 * 121.66952 * 359.71271 * 18 17 15 21 21 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 23 23 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 24 24 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 25 25 H 1.08005 * 120.76242 * 359.97438 * 14 13 12 26 26 H 0.96704 * 114.00229 * 89.99488 * 16 15 14 27 27 H 0.96702 * 113.99947 * 90.00411 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.5694 -6.6602 1.1918 15 6 3.4782 -7.7160 1.1475 16 8 3.8727 -8.3317 2.2884 17 7 3.9519 -8.1099 -0.0288 18 6 3.5698 -7.5113 -1.1447 19 8 4.0726 -7.9375 -2.3280 20 7 2.7048 -6.5099 -1.1349 21 1 -0.4851 0.8400 -0.0004 22 1 2.9191 -3.6476 0.0027 23 1 0.5889 -4.9739 0.8903 24 1 0.5910 -4.9743 -0.8897 25 1 2.1668 -6.3169 2.1334 26 1 3.3186 -9.0825 2.5420 27 1 3.5500 -8.6334 -2.7496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640014001.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:53 Heat of formation + Delta-G solvation = -100.238654 kcal Electronic energy + Delta-G solvation = -16082.519102 eV Core-core repulsion = 13033.170548 eV Total energy + Delta-G solvation = -3049.348554 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.47914 -39.49236 -39.23399 -38.05925 -35.74567 -34.62131 -33.82751 -32.08590 -29.32646 -27.37413 -25.20292 -23.89119 -21.81580 -20.61684 -19.65589 -19.25310 -18.69924 -17.61415 -17.47732 -16.67863 -16.26374 -15.99356 -15.85566 -15.21805 -14.64152 -14.47732 -13.87266 -13.50806 -13.42988 -13.11953 -12.86739 -12.69449 -12.63392 -12.02212 -12.01696 -11.78335 -10.93332 -10.60804 -10.44720 -9.89971 -9.58941 -8.30490 -6.86928 -0.43858 -0.33502 1.41822 1.42600 1.58032 1.69991 2.20935 2.32839 2.43936 2.48640 2.93953 3.25626 3.59154 3.74317 3.79288 4.11409 4.30724 4.63156 4.63552 4.98502 5.31906 5.64997 5.82969 6.06743 6.21085 6.44158 6.50415 6.77806 6.86002 7.42547 8.43924 8.64688 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.005010 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.465597 B = 5587.229483 C = 5705.854328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.031 3.969 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.543 3.457 10 O -0.624 6.624 11 N -0.749 5.749 12 C 0.183 3.817 13 C 0.201 3.799 14 C -0.223 4.223 15 C 0.392 3.608 16 O -0.471 6.471 17 N -0.562 5.562 18 C 0.514 3.486 19 O -0.462 6.462 20 N -0.542 5.542 21 H 0.276 0.724 22 H 0.391 0.609 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.183 0.817 26 H 0.435 0.565 27 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.270 -15.275 2.665 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.609 4.609 8 H 0.103 0.897 9 C 0.348 3.652 10 O -0.511 6.511 11 N -0.404 5.404 12 C 0.058 3.942 13 C 0.056 3.944 14 C -0.247 4.247 15 C 0.203 3.797 16 O -0.283 6.283 17 N -0.300 5.300 18 C 0.210 3.790 19 O -0.268 6.268 20 N -0.270 5.270 21 H 0.086 0.914 22 H 0.224 0.776 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.201 0.799 26 H 0.299 0.701 27 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 6.446 -14.800 1.885 16.252 hybrid contribution -0.327 0.067 0.404 0.524 sum 6.119 -14.732 2.288 16.115 Atomic orbital electron populations 1.70157 1.09364 1.29096 1.36071 1.26923 0.95560 1.04779 0.91199 0.85025 0.78768 0.75191 0.79356 1.18818 1.19503 1.17421 1.21384 0.94673 0.90001 1.54807 0.89740 1.18530 0.86830 0.83778 0.76060 1.90563 1.15811 1.87579 1.57161 1.45763 1.09078 1.03883 1.81703 1.19803 0.91539 0.80220 1.02618 1.21336 0.92319 0.93331 0.87375 1.22992 1.00531 0.99582 1.01562 1.19114 0.86392 0.89569 0.84575 1.84721 1.58529 1.51009 1.34018 1.67446 1.28796 1.34332 0.99406 1.19905 0.86449 0.87084 0.85609 1.84703 1.52374 1.60260 1.29500 1.67843 1.12358 1.14286 1.32516 0.91388 0.77599 0.89733 0.92396 0.79940 0.70085 0.70281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.37 11.83 21.83 0.26 -49.11 15 2 C 0.03 1.72 5.50 85.30 0.47 2.19 15 3 Si 1.00 40.79 29.56 68.60 2.03 42.82 15 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 6 H -0.25 -9.60 7.11 99.48 0.71 -8.90 15 7 C -0.57 -32.36 9.54 24.83 0.24 -32.12 15 8 H 0.08 4.34 7.85 -2.91 -0.02 4.32 15 9 C 0.54 31.14 7.75 86.36 0.67 31.81 15 10 O -0.62 -40.83 15.02 -4.30 -0.06 -40.90 15 11 N -0.75 -33.59 5.54 -471.14 -2.61 -36.20 15 12 C 0.18 6.82 6.02 85.63 0.52 7.33 15 13 C 0.20 6.04 6.18 42.46 0.26 6.30 15 14 C -0.22 -5.23 9.78 22.54 0.22 -5.01 15 15 C 0.39 8.80 7.83 84.82 0.66 9.46 15 16 O -0.47 -7.67 13.57 -88.13 -1.20 -8.87 15 17 N -0.56 -14.73 10.49 -426.38 -4.47 -19.20 15 18 C 0.51 14.32 8.71 180.58 1.57 15.89 15 19 O -0.46 -10.69 13.64 -87.49 -1.19 -11.88 15 20 N -0.54 -17.12 10.40 -301.71 -3.14 -20.26 15 21 H 0.28 15.05 8.29 -92.71 -0.77 14.28 15 22 H 0.39 16.03 8.44 -92.71 -0.78 15.24 15 23 H 0.08 3.00 8.06 -2.38 -0.02 2.98 15 24 H 0.06 2.37 8.14 -2.38 -0.02 2.35 15 25 H 0.18 3.42 8.06 -2.91 -0.02 3.40 15 26 H 0.43 1.84 9.06 -74.05 -0.67 1.16 15 27 H 0.43 4.82 9.06 -74.06 -0.67 4.15 15 Total: -1.00 -81.65 259.65 -6.63 -88.29 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.86 Total: 19.46 kcal Atomic # 6 Polarization: 31.24 SS G_CDS: 4.61 Total: 35.85 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -9.96 Total: -124.77 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -2.45 Total: -61.64 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -81.65 -6.63 -88.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640014001.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.951 kcal (2) G-P(sol) polarization free energy of solvation -81.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds