Wall clock time and date at job start Sun Mar 29 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34816 * 126.59341 * 2 1 4 4 C 1.36602 * 106.83847 * 179.97438 * 3 2 1 5 5 C 1.47523 * 125.76912 * 180.26587 * 4 3 2 6 6 O 1.21593 * 119.99811 * 359.71274 * 5 4 3 7 7 N 1.34778 * 119.99693 * 179.71348 * 5 4 3 8 8 N 1.40099 * 119.99819 * 179.97438 * 7 5 4 9 9 C 1.34773 * 120.00207 * 180.02562 * 8 7 5 10 10 O 1.21693 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.46368 * 120.00465 * 180.02562 * 9 8 7 12 12 H 1.08001 * 119.99758 * 359.97438 * 11 9 8 13 13 C 1.40048 * 120.00444 * 179.97438 * 11 9 8 14 14 N 1.30667 * 119.99677 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00244 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46897 * 90.00114 * 15 13 11 17 17 H 1.48498 * 109.47199 * 210.00323 * 15 13 11 18 18 H 1.48500 * 109.46944 * 330.00465 * 15 13 11 19 19 N 1.34404 * 108.45542 * 359.97438 * 4 3 2 20 20 N 1.28755 * 109.52541 * 0.02562 * 19 4 3 21 21 H 1.09001 * 109.46728 * 270.02037 * 1 2 3 22 22 H 1.09006 * 109.46828 * 30.01886 * 1 2 3 23 23 H 1.08998 * 109.47155 * 150.01767 * 1 2 3 24 24 H 1.07999 * 126.58396 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00024 * 0.02562 * 7 5 4 26 26 H 0.96999 * 120.00160 * 359.97438 * 8 7 5 27 27 H 0.97005 * 119.99976 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 0.0006 5 6 4.7705 1.4558 0.0064 6 8 4.6755 2.6680 0.0059 7 7 5.9866 0.8749 0.0122 8 7 7.1416 1.6679 0.0171 9 6 8.3578 1.0872 0.0224 10 8 8.4527 -0.1260 0.0233 11 6 9.5644 1.9157 0.0281 12 1 9.4802 2.9924 0.0277 13 6 10.8282 1.3122 0.0341 14 7 10.9301 0.0095 0.0341 15 14 12.3682 2.3696 0.0407 16 1 12.7698 2.6503 1.4425 17 1 13.4657 1.6499 -0.6541 18 1 12.0931 3.6491 -0.6611 19 7 3.5239 -0.7230 0.0015 20 7 2.3009 -1.1257 0.0010 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8899 -0.5142 23 1 -0.3633 -0.8901 -0.5135 24 1 1.9562 2.1162 -0.0004 25 1 6.0623 -0.0921 0.0122 26 1 7.0659 2.6350 0.0160 27 1 11.8055 -0.4085 0.0379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641367114.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:03 Heat of formation + Delta-G solvation = 58.465867 kcal Electronic energy + Delta-G solvation = -16001.603376 eV Core-core repulsion = 12991.429517 eV Total energy + Delta-G solvation = -3010.173858 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.20865 -39.04705 -37.05053 -34.80129 -34.06534 -32.51120 -31.23313 -29.93269 -27.94081 -26.16046 -23.49333 -22.28329 -20.61954 -20.42307 -18.41343 -16.90182 -16.55135 -16.33791 -15.89545 -15.20333 -14.65886 -14.59546 -14.23796 -13.77864 -13.49068 -13.39109 -12.59658 -12.51722 -12.17982 -11.37542 -11.28426 -11.10863 -10.60648 -10.49760 -10.35458 -10.08271 -9.87787 -9.33173 -8.92582 -7.90425 -7.10518 -6.32998 -4.78148 1.07120 1.80144 1.91525 2.90917 3.11725 3.19404 3.24538 3.54383 4.06803 4.16450 4.21044 4.46713 4.65026 4.65425 4.89899 4.93584 5.25941 5.56899 5.65855 5.85889 6.20771 7.32601 7.33466 7.73694 7.92684 7.99906 8.22949 8.82907 8.89657 9.26412 10.42721 10.60380 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.072710 B = 0.004513 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.001292 B = 6202.282914 C = 6572.132830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.368 5.368 3 C 0.091 3.909 4 C -0.083 4.083 5 C 0.585 3.415 6 O -0.562 6.562 7 N -0.489 5.489 8 N -0.558 5.558 9 C 0.553 3.447 10 O -0.576 6.576 11 C -0.530 4.530 12 H 0.076 0.924 13 C 0.086 3.914 14 N -0.762 5.762 15 Si 0.918 3.082 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.263 1.263 19 N -0.201 5.201 20 N -0.068 5.068 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.206 0.794 25 H 0.433 0.567 26 H 0.414 0.586 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.986 2.878 -0.103 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.154 5.154 3 C -0.066 4.066 4 C -0.224 4.224 5 C 0.367 3.633 6 O -0.440 6.440 7 N -0.229 5.229 8 N -0.313 5.313 9 C 0.359 3.641 10 O -0.457 6.457 11 C -0.568 4.568 12 H 0.094 0.906 13 C -0.135 4.135 14 N -0.390 5.390 15 Si 0.742 3.258 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.187 1.187 19 N -0.075 5.075 20 N -0.049 5.049 21 H 0.107 0.893 22 H 0.115 0.885 23 H 0.118 0.882 24 H 0.223 0.777 25 H 0.275 0.725 26 H 0.253 0.747 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.809 1.087 -0.105 17.842 hybrid contribution 0.370 1.508 0.019 1.552 sum -17.439 2.595 -0.086 17.631 Atomic orbital electron populations 1.22162 0.72699 1.05669 1.04660 1.50372 1.09032 1.05794 1.50169 1.23287 0.89950 0.94922 0.98420 1.21350 0.94367 0.90170 1.16525 1.16577 0.80762 0.86581 0.79369 1.90766 1.86267 1.12685 1.54297 1.44469 0.98848 1.09229 1.70360 1.45962 0.95605 1.06313 1.83372 1.18684 0.79738 0.88683 0.77035 1.90637 1.84985 1.14465 1.55587 1.20669 0.88078 0.93623 1.54473 0.90560 1.25730 1.00161 0.95063 0.92507 1.70014 1.25128 1.09824 1.34061 0.86193 0.80258 0.80333 0.78983 1.19564 1.20332 1.18668 1.74716 1.12701 1.10400 1.09693 1.82005 0.93500 1.06408 1.22945 0.89314 0.88457 0.88165 0.77710 0.72539 0.74682 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.51 59.85 0.69 1.07 15 2 N -0.37 -3.78 4.03 -67.85 -0.27 -4.05 15 3 C 0.09 1.04 11.31 -16.83 -0.19 0.85 15 4 C -0.08 -1.33 6.99 -83.55 -0.58 -1.92 15 5 C 0.59 11.26 7.93 -12.47 -0.10 11.16 15 6 O -0.56 -11.47 16.70 5.28 0.09 -11.38 15 7 N -0.49 -10.68 6.26 30.46 0.19 -10.48 15 8 N -0.56 -13.49 6.26 30.19 0.19 -13.30 15 9 C 0.55 15.78 7.86 -12.99 -0.10 15.67 15 10 O -0.58 -18.38 14.86 5.20 0.08 -18.30 15 11 C -0.53 -14.72 9.54 -35.63 -0.34 -15.06 15 12 H 0.08 1.92 7.85 -52.49 -0.41 1.51 15 13 C 0.09 2.35 5.50 -17.37 -0.10 2.26 15 14 N -0.76 -22.35 11.83 55.55 0.66 -21.69 15 15 Si 0.92 19.71 29.56 -169.99 -5.02 14.68 15 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 18 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 19 N -0.20 -3.41 12.04 32.85 0.40 -3.01 15 20 N -0.07 -0.99 13.78 60.35 0.83 -0.15 15 21 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 15 22 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 15 23 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 15 24 H 0.21 1.60 8.06 -52.49 -0.42 1.18 15 25 H 0.43 9.65 7.68 -182.60 -1.40 8.25 15 26 H 0.41 9.26 7.98 -182.60 -1.46 7.80 15 27 H 0.27 7.20 8.29 -40.82 -0.34 6.86 15 LS Contribution 261.57 15.07 3.94 3.94 Total: -1.00 -36.67 261.57 -3.75 -40.42 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.10 Total: 9.31 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -0.72 Total: 14.03 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 1.99 Total: -52.70 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: 0.17 Total: -29.68 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -36.67 -3.75 -40.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641367114.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.884 kcal (2) G-P(sol) polarization free energy of solvation -36.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds