Wall clock time and date at job start Sun Mar 29 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34816 * 126.59341 * 2 1 4 4 C 1.36602 * 106.83847 * 179.97438 * 3 2 1 5 5 C 1.47523 * 125.76912 * 180.26587 * 4 3 2 6 6 O 1.21593 * 119.99811 * 359.71274 * 5 4 3 7 7 N 1.34778 * 119.99693 * 179.71348 * 5 4 3 8 8 N 1.40099 * 119.99819 * 179.97438 * 7 5 4 9 9 C 1.34773 * 120.00207 * 180.02562 * 8 7 5 10 10 O 1.21693 * 119.99695 * 359.97438 * 9 8 7 11 11 C 1.46368 * 120.00465 * 180.02562 * 9 8 7 12 12 H 1.08001 * 119.99758 * 359.97438 * 11 9 8 13 13 C 1.40048 * 120.00444 * 179.97438 * 11 9 8 14 14 N 1.30667 * 119.99677 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00244 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46897 * 90.00114 * 15 13 11 17 17 H 1.48498 * 109.47199 * 210.00323 * 15 13 11 18 18 H 1.48500 * 109.46944 * 330.00465 * 15 13 11 19 19 N 1.34404 * 108.45542 * 359.97438 * 4 3 2 20 20 N 1.28755 * 109.52541 * 0.02562 * 19 4 3 21 21 H 1.09001 * 109.46728 * 270.02037 * 1 2 3 22 22 H 1.09006 * 109.46828 * 30.01886 * 1 2 3 23 23 H 1.08998 * 109.47155 * 150.01767 * 1 2 3 24 24 H 1.07999 * 126.58396 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00024 * 0.02562 * 7 5 4 26 26 H 0.96999 * 120.00160 * 359.97438 * 8 7 5 27 27 H 0.97005 * 119.99976 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 0.0006 5 6 4.7705 1.4558 0.0064 6 8 4.6755 2.6680 0.0059 7 7 5.9866 0.8749 0.0122 8 7 7.1416 1.6679 0.0171 9 6 8.3578 1.0872 0.0224 10 8 8.4527 -0.1260 0.0233 11 6 9.5644 1.9157 0.0281 12 1 9.4802 2.9924 0.0277 13 6 10.8282 1.3122 0.0341 14 7 10.9301 0.0095 0.0341 15 14 12.3682 2.3696 0.0407 16 1 12.7698 2.6503 1.4425 17 1 13.4657 1.6499 -0.6541 18 1 12.0931 3.6491 -0.6611 19 7 3.5239 -0.7230 0.0015 20 7 2.3009 -1.1257 0.0010 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8899 -0.5142 23 1 -0.3633 -0.8901 -0.5135 24 1 1.9562 2.1162 -0.0004 25 1 6.0623 -0.0921 0.0122 26 1 7.0659 2.6350 0.0160 27 1 11.8055 -0.4085 0.0379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641367114.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:03 Heat of formation + Delta-G solvation = 26.768045 kcal Electronic energy + Delta-G solvation = -16002.977896 eV Core-core repulsion = 12991.429517 eV Total energy + Delta-G solvation = -3011.548379 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.25883 -40.72553 -39.05615 -36.02713 -35.58822 -34.62548 -32.62429 -31.46790 -28.81478 -28.07411 -24.84592 -23.21876 -22.43944 -22.00945 -19.90090 -18.59552 -18.26358 -17.50556 -17.30532 -16.83357 -16.05312 -15.85598 -15.65133 -15.46401 -14.75513 -14.56063 -14.08684 -13.96744 -13.28236 -13.15368 -12.81035 -12.72874 -12.28229 -12.02253 -11.97643 -11.45909 -11.34408 -10.95143 -10.43069 -10.13659 -9.02873 -8.38393 -6.94848 0.12839 0.52327 1.04023 1.34939 1.44881 1.47614 1.63316 2.09856 2.28920 2.41834 2.98160 3.37243 3.51517 3.73312 3.92295 3.97924 4.41194 4.44741 4.70841 4.75804 5.27608 5.44540 5.47452 5.93783 6.05275 6.28948 6.76774 6.85019 7.12105 7.27111 8.32245 8.57020 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.072710 B = 0.004513 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.001292 B = 6202.282914 C = 6572.132830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.348 5.348 3 C 0.124 3.876 4 C -0.121 4.121 5 C 0.595 3.405 6 O -0.573 6.573 7 N -0.504 5.504 8 N -0.554 5.554 9 C 0.539 3.461 10 O -0.622 6.622 11 C -0.556 4.556 12 H 0.098 0.902 13 C 0.029 3.971 14 N -0.815 5.815 15 Si 1.009 2.991 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.247 1.247 19 N -0.237 5.237 20 N -0.089 5.089 21 H 0.110 0.890 22 H 0.134 0.866 23 H 0.109 0.891 24 H 0.248 0.752 25 H 0.427 0.573 26 H 0.422 0.578 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.472 4.859 -0.117 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.133 5.133 3 C -0.035 4.035 4 C -0.262 4.262 5 C 0.380 3.620 6 O -0.452 6.452 7 N -0.245 5.245 8 N -0.306 5.306 9 C 0.345 3.655 10 O -0.507 6.507 11 C -0.594 4.594 12 H 0.116 0.884 13 C -0.187 4.187 14 N -0.443 5.443 15 Si 0.827 3.173 16 H -0.184 1.184 17 H -0.196 1.196 18 H -0.170 1.170 19 N -0.110 5.110 20 N -0.070 5.070 21 H 0.128 0.872 22 H 0.153 0.847 23 H 0.128 0.872 24 H 0.264 0.736 25 H 0.268 0.732 26 H 0.263 0.737 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.396 3.094 -0.119 19.641 hybrid contribution 0.541 0.902 0.027 1.052 sum -18.854 3.996 -0.092 19.273 Atomic orbital electron populations 1.22798 0.68811 1.08048 1.06813 1.50786 1.10873 1.04325 1.47304 1.23812 0.88158 0.96560 0.94990 1.21111 0.94516 0.90111 1.20460 1.17014 0.80718 0.86797 0.77469 1.90739 1.86574 1.13310 1.54576 1.44649 0.98765 1.08791 1.72322 1.45465 0.96033 1.06683 1.82445 1.19035 0.81272 0.88320 0.76886 1.90590 1.86058 1.16264 1.57806 1.21236 0.88630 0.94763 1.54722 0.88440 1.27050 1.04146 0.96487 0.91002 1.70167 1.26687 1.12462 1.35014 0.84851 0.74543 0.78325 0.79569 1.18444 1.19619 1.17017 1.74696 1.14233 1.11163 1.10948 1.81900 0.93305 1.08142 1.23667 0.87164 0.84750 0.87234 0.73599 0.73177 0.73734 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.51 127.77 1.47 1.78 15 2 N -0.35 -6.13 4.03 -368.57 -1.49 -7.62 15 3 C 0.12 2.46 11.31 83.85 0.95 3.41 15 4 C -0.12 -3.79 6.99 40.82 0.29 -3.51 15 5 C 0.60 23.02 7.93 86.69 0.69 23.71 15 6 O -0.57 -22.99 16.70 -4.01 -0.07 -23.06 15 7 N -0.50 -22.81 6.26 -175.82 -1.10 -23.91 15 8 N -0.55 -27.56 6.26 -176.63 -1.10 -28.66 15 9 C 0.54 31.82 7.86 86.36 0.68 32.50 15 10 O -0.62 -41.61 14.86 -4.33 -0.06 -41.68 15 11 C -0.56 -31.25 9.54 24.83 0.24 -31.02 15 12 H 0.10 4.87 7.85 -2.91 -0.02 4.84 15 13 C 0.03 1.61 5.50 85.31 0.47 2.08 15 14 N -0.81 -49.00 11.83 21.83 0.26 -48.74 15 15 Si 1.01 40.03 29.56 68.60 2.03 42.06 15 16 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 17 H -0.27 -10.37 7.11 99.48 0.71 -9.67 15 18 H -0.25 -9.10 7.11 99.48 0.71 -8.39 15 19 N -0.24 -8.11 12.04 -49.99 -0.60 -8.71 15 20 N -0.09 -2.52 13.78 37.02 0.51 -2.01 15 21 H 0.11 0.12 8.14 -2.39 -0.02 0.10 15 22 H 0.13 -0.32 8.14 -2.38 -0.02 -0.34 15 23 H 0.11 0.35 8.14 -2.39 -0.02 0.33 15 24 H 0.25 2.67 8.06 -2.91 -0.02 2.64 15 25 H 0.43 20.21 7.68 -213.32 -1.64 18.57 15 26 H 0.42 19.18 7.98 -213.32 -1.70 17.48 15 27 H 0.28 15.12 8.29 -92.70 -0.77 14.35 15 Total: -1.00 -83.62 261.57 1.06 -82.56 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -2.09 Total: 30.81 kcal Atomic # 6 Polarization: 24.19 SS G_CDS: 4.78 Total: 28.96 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -3.52 Total: -119.65 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -0.13 Total: -64.74 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -83.62 1.06 -82.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641367114.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.330 kcal (2) G-P(sol) polarization free energy of solvation -83.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds