Wall clock time and date at job start Sun Mar 29 2020 21:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48505 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47005 * 299.99761 * 3 2 1 6 6 H 1.48493 * 109.47394 * 60.00240 * 3 2 1 7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 9 14 14 N 1.31760 * 119.05984 * 269.72973 * 13 12 11 15 15 C 1.32973 * 120.85705 * 179.72162 * 14 13 12 16 16 O 1.35547 * 120.47249 * 180.25469 * 15 14 13 17 17 C 1.39010 * 119.05083 * 0.53696 * 15 14 13 18 18 C 1.39012 * 118.30252 * 359.73809 * 17 15 14 19 19 O 1.35536 * 120.47570 * 180.02562 * 18 17 15 20 20 N 1.31748 * 119.06504 * 89.99828 * 13 12 11 21 21 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 22 22 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 23 23 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 24 24 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 25 25 H 0.96698 * 113.99416 * 270.28727 * 16 15 14 26 26 H 1.07998 * 120.84833 * 179.70912 * 17 15 14 27 27 H 0.96703 * 113.99854 * 269.97979 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8820 2.3965 1.2124 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0016 14 7 2.6076 -6.5513 -1.1536 15 6 3.4754 -7.5580 -1.1957 16 8 3.8977 -8.0521 -2.3852 17 6 3.9387 -8.1003 -0.0026 18 6 3.4755 -7.5590 1.1911 19 8 3.8986 -8.0535 2.3800 20 7 2.6118 -6.5488 1.1497 21 1 -0.4850 0.8401 0.0004 22 1 2.9190 -3.6477 -0.0009 23 1 0.5896 -4.9744 0.8887 24 1 0.5902 -4.9740 -0.8913 25 1 3.3486 -8.7693 -2.7303 26 1 4.6402 -8.9214 -0.0030 27 1 3.3500 -8.7711 2.7252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647867806.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:42 Heat of formation + Delta-G solvation = -101.329801 kcal Electronic energy + Delta-G solvation = -16092.784143 eV Core-core repulsion = 13043.388274 eV Total energy + Delta-G solvation = -3049.395870 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.48083 -39.48776 -39.21959 -38.26644 -35.36923 -34.47213 -33.79064 -32.31272 -29.39275 -27.45733 -25.04380 -23.98224 -21.83830 -20.56507 -19.76509 -19.30142 -18.46926 -17.51952 -17.51378 -16.65346 -16.24014 -16.04665 -15.84721 -15.28515 -14.87946 -14.54772 -13.85089 -13.64550 -13.50230 -13.10613 -12.78095 -12.67200 -12.65837 -11.98251 -11.61771 -11.57135 -10.94762 -10.68753 -10.58549 -9.90644 -9.61033 -8.30927 -6.87799 -0.48106 -0.24588 1.41154 1.41303 1.59471 1.96238 2.17934 2.32750 2.35059 2.45620 2.88914 3.22913 3.58442 3.76159 3.85503 4.03476 4.22080 4.59670 4.62606 4.98114 5.31285 5.72716 5.81748 6.02661 6.20149 6.42672 6.52533 6.84919 6.86236 7.40505 8.42545 8.64451 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.036060 B = 0.005083 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.307214 B = 5507.544493 C = 5636.354895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.543 3.457 10 O -0.624 6.624 11 N -0.747 5.747 12 C 0.204 3.796 13 C 0.362 3.638 14 N -0.555 5.555 15 C 0.371 3.629 16 O -0.474 6.474 17 C -0.235 4.235 18 C 0.371 3.629 19 O -0.474 6.474 20 N -0.555 5.555 21 H 0.277 0.723 22 H 0.389 0.611 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.432 0.568 26 H 0.198 0.802 27 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.308 -18.249 -0.004 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.186 4.186 3 Si 0.820 3.180 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.607 4.607 8 H 0.102 0.898 9 C 0.348 3.652 10 O -0.511 6.511 11 N -0.403 5.403 12 C 0.078 3.922 13 C 0.093 3.907 14 N -0.282 5.282 15 C 0.184 3.816 16 O -0.285 6.285 17 C -0.259 4.259 18 C 0.185 3.815 19 O -0.285 6.285 20 N -0.282 5.282 21 H 0.087 0.913 22 H 0.222 0.778 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.297 0.703 26 H 0.215 0.785 27 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 8.558 -16.809 -0.003 18.862 hybrid contribution 0.351 -0.732 -0.002 0.812 sum 8.910 -17.541 -0.005 19.674 Atomic orbital electron populations 1.70173 1.09430 1.29085 1.36009 1.26975 0.95612 1.04877 0.91155 0.84926 0.79126 0.75229 0.78704 1.17358 1.19094 1.19081 1.21396 0.94633 0.89877 1.54833 0.89756 1.18583 0.86880 0.83697 0.76066 1.90556 1.15788 1.87545 1.57220 1.45735 1.08953 1.03876 1.81693 1.19507 0.90955 0.79583 1.02171 1.22265 0.92851 0.93908 0.81666 1.67835 1.15284 1.13712 1.31414 1.19485 0.87353 0.87780 0.86936 1.84731 1.53686 1.56920 1.33171 1.23214 1.06680 1.05580 0.90417 1.19479 0.87371 0.87754 0.86937 1.84729 1.53669 1.56881 1.33224 1.67822 1.15264 1.13692 1.31469 0.91340 0.77816 0.91160 0.91167 0.70349 0.78514 0.70339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.63 11.83 21.84 0.26 -50.37 15 2 C 0.03 1.66 5.50 85.31 0.47 2.13 15 3 Si 1.00 41.88 29.56 68.60 2.03 43.91 15 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 7 C -0.57 -33.53 9.54 24.83 0.24 -33.29 15 8 H 0.08 4.51 7.85 -2.91 -0.02 4.49 15 9 C 0.54 32.79 7.75 86.36 0.67 33.46 15 10 O -0.62 -42.63 15.02 -4.30 -0.06 -42.70 15 11 N -0.75 -36.63 5.54 -471.13 -2.61 -39.24 15 12 C 0.20 8.70 6.10 85.63 0.52 9.22 15 13 C 0.36 12.63 7.01 138.78 0.97 13.60 15 14 N -0.55 -17.68 10.36 -300.79 -3.11 -20.79 15 15 C 0.37 8.59 7.83 84.71 0.66 9.25 15 16 O -0.47 -8.21 13.57 -88.52 -1.20 -9.41 15 17 C -0.23 -4.27 10.08 22.64 0.23 -4.05 15 18 C 0.37 8.59 7.83 84.71 0.66 9.25 15 19 O -0.47 -8.20 13.57 -88.40 -1.20 -9.40 15 20 N -0.55 -17.68 10.35 -300.81 -3.11 -20.80 15 21 H 0.28 15.37 8.29 -92.71 -0.77 14.60 15 22 H 0.39 17.55 8.44 -92.71 -0.78 16.77 15 23 H 0.07 3.10 8.14 -2.39 -0.02 3.08 15 24 H 0.07 3.10 8.14 -2.39 -0.02 3.08 15 25 H 0.43 2.37 9.06 -74.06 -0.67 1.70 15 26 H 0.20 1.93 8.06 -2.91 -0.02 1.91 15 27 H 0.43 2.36 9.06 -74.06 -0.67 1.69 15 Total: -1.00 -85.42 259.81 -5.46 -90.88 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.86 Total: 18.36 kcal Atomic # 6 Polarization: 35.14 SS G_CDS: 4.42 Total: 39.57 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -8.58 Total: -131.20 kcal Atomic # 8 Polarization: -59.04 SS G_CDS: -2.47 Total: -61.51 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -85.42 -5.46 -90.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647867806.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.451 kcal (2) G-P(sol) polarization free energy of solvation -85.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds