Wall clock time and date at job start Sun Mar 29 2020 21:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47178 * 270.00168 * 3 2 1 5 5 H 1.48511 * 109.47028 * 30.00135 * 3 2 1 6 6 H 1.48498 * 109.47086 * 150.00221 * 3 2 1 7 7 C 1.40053 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99845 * 179.97438 * 7 2 1 9 9 C 1.46371 * 120.00102 * 359.97438 * 7 2 1 10 10 O 1.21692 * 120.00016 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99862 * 179.97438 * 9 7 2 12 12 C 1.47298 * 135.91542 * 180.02562 * 11 9 7 13 13 C 1.52256 * 87.73710 * 206.03568 * 12 11 9 14 14 C 1.47300 * 135.91786 * 0.02562 * 11 9 7 15 15 N 1.46062 * 116.86555 * 92.23492 * 13 12 11 16 16 C 1.34964 * 105.98494 * 130.97635 * 15 13 12 17 17 O 1.21541 * 123.79536 * 179.97438 * 16 15 13 18 18 N 1.33986 * 112.40226 * 0.02562 * 16 15 13 19 19 C 1.35179 * 111.59361 * 359.97438 * 18 16 15 20 20 O 1.21238 * 127.47385 * 179.97438 * 19 18 16 21 21 H 0.97004 * 119.99709 * 359.97438 * 1 2 3 22 22 H 1.09002 * 113.52033 * 320.76682 * 12 11 9 23 23 H 1.08999 * 113.51887 * 91.30542 * 12 11 9 24 24 H 1.09000 * 113.52009 * 268.62753 * 14 11 9 25 25 H 1.09002 * 113.51856 * 39.16726 * 14 11 9 26 26 H 0.96999 * 127.00728 * 310.97934 * 15 13 12 27 27 H 0.97007 * 124.20433 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.5905 -5.0764 -0.0024 13 6 2.9313 -5.3512 0.6647 14 6 3.3655 -4.0517 -0.0024 15 7 2.9481 -5.3817 2.1249 16 6 3.5992 -6.5138 2.4655 17 8 3.7982 -6.8599 3.6135 18 7 4.0024 -7.2125 1.3957 19 6 3.6516 -6.6021 0.2417 20 8 3.8708 -6.9805 -0.8891 21 1 -0.4850 0.8401 0.0004 22 1 0.7340 -5.3104 0.6299 23 1 1.5063 -5.5032 -1.0018 24 1 3.7768 -4.1933 -1.0018 25 1 3.9965 -3.4262 0.6290 26 1 2.5686 -4.7227 2.7270 27 1 4.4859 -8.0522 1.4434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648745931.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:48 Heat of formation + Delta-G solvation = -36.068301 kcal Electronic energy + Delta-G solvation = -16838.172054 eV Core-core repulsion = 13791.606135 eV Total energy + Delta-G solvation = -3046.565919 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.60105 -39.13117 -38.42003 -36.31100 -35.49124 -32.98194 -32.60177 -28.73647 -26.53778 -25.60377 -24.05055 -22.72016 -20.77448 -19.32201 -18.09040 -17.08900 -16.66247 -16.56487 -16.00419 -15.85343 -15.51178 -14.53337 -14.31014 -14.03343 -13.94066 -13.11885 -12.74623 -12.34658 -11.90621 -11.40852 -11.13496 -11.04529 -11.00919 -10.60201 -10.46934 -10.34085 -10.28424 -9.37271 -9.01215 -7.90414 -7.64977 -6.37655 -4.83865 1.45104 2.39619 2.93213 3.05145 3.05271 3.12862 3.15860 3.68544 4.00260 4.16264 4.35021 4.45082 4.92522 5.18828 5.54334 5.69593 5.80169 5.81539 5.93310 6.12787 6.29718 6.74879 6.89174 7.27468 7.32714 7.86424 8.10085 8.21790 8.84262 9.27358 10.35108 10.55350 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.006330 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.177737 B = 4422.552726 C = 4549.774135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.583 3.417 10 O -0.566 6.566 11 N -0.658 5.658 12 C 0.122 3.878 13 C 0.057 3.943 14 C 0.131 3.869 15 N -0.689 5.689 16 C 0.707 3.293 17 O -0.549 6.549 18 N -0.682 5.682 19 C 0.549 3.451 20 O -0.461 6.461 21 H 0.272 0.728 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.447 0.553 27 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.076 -8.774 1.254 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.570 4.570 8 H 0.089 0.911 9 C 0.391 3.609 10 O -0.447 6.447 11 N -0.400 5.400 12 C -0.003 4.003 13 C -0.036 4.036 14 C 0.005 3.995 15 N -0.352 5.352 16 C 0.407 3.593 17 O -0.423 6.423 18 N -0.353 5.353 19 C 0.334 3.666 20 O -0.329 6.329 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.293 0.707 27 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.231 -8.715 1.236 11.391 hybrid contribution 0.586 0.605 0.235 0.874 sum 7.817 -8.110 1.471 11.359 Atomic orbital electron populations 1.70003 1.07131 1.27782 1.34386 1.25739 0.94708 1.00465 0.92501 0.86280 0.80085 0.80912 0.79012 1.19570 1.20303 1.18782 1.20770 0.93657 0.88403 1.54210 0.91141 1.18079 0.86477 0.80129 0.76176 1.90655 1.13629 1.84854 1.55563 1.50236 1.05135 1.03609 1.81054 1.22590 0.92828 0.85419 0.99510 1.22191 1.02042 0.96109 0.83302 1.22611 0.88730 0.88537 0.99632 1.45052 1.59789 1.24316 1.06059 1.15948 0.78428 0.80841 0.84115 1.91041 1.61160 1.72226 1.17866 1.44472 1.56144 1.26610 1.08118 1.20244 0.77440 0.84762 0.84184 1.90831 1.53255 1.69180 1.19639 0.91742 0.90028 0.89313 0.89128 0.89551 0.70750 0.72832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.90 11.83 55.55 0.66 -21.24 15 2 C 0.09 2.29 5.50 -17.36 -0.10 2.19 15 3 Si 0.91 19.15 29.56 -169.99 -5.02 14.12 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.26 -5.34 7.11 56.52 0.40 -4.93 15 7 C -0.53 -14.18 9.38 -35.63 -0.33 -14.52 15 8 H 0.07 1.71 7.75 -52.49 -0.41 1.30 15 9 C 0.58 15.66 8.00 -12.99 -0.10 15.55 15 10 O -0.57 -17.60 15.79 5.20 0.08 -17.52 15 11 N -0.66 -13.53 3.70 -186.79 -0.69 -14.22 15 12 C 0.12 2.00 8.18 -7.78 -0.06 1.94 15 13 C 0.06 0.78 1.73 -135.21 -0.23 0.55 15 14 C 0.13 2.04 7.89 -7.71 -0.06 1.98 15 15 N -0.69 -9.03 6.40 -55.63 -0.36 -9.38 15 16 C 0.71 9.30 9.01 -87.45 -0.79 8.51 15 17 O -0.55 -8.82 18.04 5.33 0.10 -8.73 15 18 N -0.68 -7.34 5.73 -15.93 -0.09 -7.43 15 19 C 0.55 6.82 8.13 -10.94 -0.09 6.73 15 20 O -0.46 -6.58 18.02 5.59 0.10 -6.48 15 21 H 0.27 7.04 8.29 -40.82 -0.34 6.71 15 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 23 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 24 H 0.09 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.45 5.85 8.96 -40.82 -0.37 5.48 15 27 H 0.43 3.48 8.96 -40.82 -0.37 3.11 15 LS Contribution 254.75 15.07 3.84 3.84 Total: -1.00 -34.22 254.75 -5.12 -39.34 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -1.96 Total: 4.77 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: -1.77 Total: 22.93 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.48 Total: -52.27 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: 0.28 Total: -32.73 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.22 -5.12 -39.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648745931.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.273 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds