Wall clock time and date at job start Sun Mar 29 2020 21:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47178 * 270.00168 * 3 2 1 5 5 H 1.48511 * 109.47028 * 30.00135 * 3 2 1 6 6 H 1.48498 * 109.47086 * 150.00221 * 3 2 1 7 7 C 1.40053 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99845 * 179.97438 * 7 2 1 9 9 C 1.46371 * 120.00102 * 359.97438 * 7 2 1 10 10 O 1.21692 * 120.00016 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99862 * 179.97438 * 9 7 2 12 12 C 1.47298 * 135.91542 * 180.02562 * 11 9 7 13 13 C 1.52256 * 87.73710 * 206.03568 * 12 11 9 14 14 C 1.47300 * 135.91786 * 0.02562 * 11 9 7 15 15 N 1.46062 * 116.86555 * 92.23492 * 13 12 11 16 16 C 1.34964 * 105.98494 * 130.97635 * 15 13 12 17 17 O 1.21541 * 123.79536 * 179.97438 * 16 15 13 18 18 N 1.33986 * 112.40226 * 0.02562 * 16 15 13 19 19 C 1.35179 * 111.59361 * 359.97438 * 18 16 15 20 20 O 1.21238 * 127.47385 * 179.97438 * 19 18 16 21 21 H 0.97004 * 119.99709 * 359.97438 * 1 2 3 22 22 H 1.09002 * 113.52033 * 320.76682 * 12 11 9 23 23 H 1.08999 * 113.51887 * 91.30542 * 12 11 9 24 24 H 1.09000 * 113.52009 * 268.62753 * 14 11 9 25 25 H 1.09002 * 113.51856 * 39.16726 * 14 11 9 26 26 H 0.96999 * 127.00728 * 310.97934 * 15 13 12 27 27 H 0.97007 * 124.20433 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.5905 -5.0764 -0.0024 13 6 2.9313 -5.3512 0.6647 14 6 3.3655 -4.0517 -0.0024 15 7 2.9481 -5.3817 2.1249 16 6 3.5992 -6.5138 2.4655 17 8 3.7982 -6.8599 3.6135 18 7 4.0024 -7.2125 1.3957 19 6 3.6516 -6.6021 0.2417 20 8 3.8708 -6.9805 -0.8891 21 1 -0.4850 0.8401 0.0004 22 1 0.7340 -5.3104 0.6299 23 1 1.5063 -5.5032 -1.0018 24 1 3.7768 -4.1933 -1.0018 25 1 3.9965 -3.4262 0.6290 26 1 2.5686 -4.7227 2.7270 27 1 4.4859 -8.0522 1.4434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648745931.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:48 Heat of formation + Delta-G solvation = -66.353933 kcal Electronic energy + Delta-G solvation = -16839.485337 eV Core-core repulsion = 13791.606135 eV Total energy + Delta-G solvation = -3047.879202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.75030 -40.49856 -39.64995 -38.06911 -36.81861 -34.67508 -34.09460 -30.40018 -28.22302 -27.06312 -25.41770 -23.80620 -22.09403 -20.93063 -19.27166 -18.72763 -17.85601 -17.70565 -17.57194 -17.22995 -16.79908 -16.23946 -15.75865 -15.46177 -15.28082 -14.54017 -14.18276 -13.89130 -13.77032 -13.12010 -12.79186 -12.73506 -12.24829 -12.20502 -11.98701 -11.55455 -11.52526 -10.95769 -10.55595 -9.96515 -9.37555 -8.33901 -6.89601 0.34307 1.35034 1.41746 1.42554 1.57990 1.85932 1.88569 2.17861 2.37803 2.44580 2.98003 3.09025 3.55023 3.64680 4.08516 4.41303 4.45535 4.53613 4.79627 4.88397 5.06658 5.30084 5.64433 5.80465 5.91087 6.27868 6.34458 6.83599 7.03621 7.43394 8.37141 8.61608 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.006330 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.177737 B = 4422.552726 C = 4549.774135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.031 3.969 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.558 4.558 8 H 0.089 0.911 9 C 0.570 3.430 10 O -0.625 6.625 11 N -0.673 5.673 12 C 0.118 3.882 13 C 0.077 3.923 14 C 0.132 3.868 15 N -0.687 5.687 16 C 0.715 3.285 17 O -0.573 6.573 18 N -0.661 5.661 19 C 0.567 3.433 20 O -0.470 6.470 21 H 0.276 0.724 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.447 0.553 27 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -9.046 1.186 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.594 4.594 8 H 0.108 0.892 9 C 0.378 3.622 10 O -0.511 6.511 11 N -0.413 5.413 12 C -0.007 4.007 13 C -0.017 4.017 14 C 0.007 3.993 15 N -0.350 5.350 16 C 0.415 3.585 17 O -0.449 6.449 18 N -0.333 5.333 19 C 0.352 3.648 20 O -0.339 6.339 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.121 0.879 24 H 0.128 0.872 25 H 0.115 0.885 26 H 0.292 0.708 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 9.585 -9.070 1.165 13.248 hybrid contribution -0.108 0.561 0.250 0.624 sum 9.478 -8.508 1.415 12.815 Atomic orbital electron populations 1.70171 1.09525 1.29194 1.36012 1.26958 0.95489 1.04864 0.91172 0.85015 0.78836 0.75057 0.79425 1.18702 1.19957 1.17027 1.21286 0.94703 0.89098 1.54332 0.89247 1.18273 0.86010 0.82100 0.75777 1.90598 1.16038 1.86536 1.57971 1.49824 1.07911 1.03971 1.79610 1.22780 0.94267 0.82959 1.00675 1.21798 1.00195 0.96370 0.83341 1.22853 0.86100 0.89101 1.01199 1.45072 1.59686 1.24471 1.05757 1.15885 0.77963 0.80611 0.84010 1.91040 1.62079 1.72706 1.19059 1.44183 1.55575 1.26864 1.06725 1.19702 0.77009 0.83997 0.84127 1.90854 1.53653 1.69223 1.20128 0.91384 0.90643 0.87884 0.87200 0.88543 0.70766 0.70872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.30 11.83 21.84 0.26 -48.04 15 2 C 0.03 1.64 5.50 85.31 0.47 2.10 15 3 Si 1.00 38.88 29.56 68.60 2.03 40.91 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 6 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 7 C -0.56 -29.75 9.38 24.83 0.23 -29.51 15 8 H 0.09 4.24 7.75 -2.91 -0.02 4.21 15 9 C 0.57 31.28 8.00 86.36 0.69 31.97 15 10 O -0.62 -40.49 15.79 -4.32 -0.07 -40.56 15 11 N -0.67 -27.50 3.70 -863.11 -3.19 -30.70 15 12 C 0.12 3.77 8.18 83.52 0.68 4.45 15 13 C 0.08 1.94 1.73 2.81 0.00 1.95 15 14 C 0.13 3.83 7.89 83.57 0.66 4.49 15 15 N -0.69 -16.81 6.40 -448.08 -2.87 -19.68 15 16 C 0.72 17.16 9.01 179.24 1.61 18.78 15 17 O -0.57 -17.33 18.04 -3.85 -0.07 -17.40 15 18 N -0.66 -12.23 5.73 -441.21 -2.53 -14.76 15 19 C 0.57 12.40 8.13 87.51 0.71 13.11 15 20 O -0.47 -11.94 18.02 -2.90 -0.05 -11.99 15 21 H 0.28 14.75 8.29 -92.71 -0.77 13.98 15 22 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 24 H 0.11 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.10 2.63 8.14 -2.39 -0.02 2.61 15 26 H 0.45 11.24 8.96 -92.71 -0.83 10.40 15 27 H 0.45 5.73 8.96 -92.70 -0.83 4.90 15 Total: -1.00 -75.64 254.75 -1.84 -77.47 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -0.41 Total: 17.40 kcal Atomic # 6 Polarization: 42.27 SS G_CDS: 5.07 Total: 47.34 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -8.33 Total: -113.18 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -0.19 Total: -69.94 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -75.64 -1.84 -77.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648745931.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.121 kcal (2) G-P(sol) polarization free energy of solvation -75.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds