Wall clock time and date at job start Sun Mar 29 2020 22:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99439 * 2 1 4 4 H 1.48500 * 109.47241 * 269.99468 * 3 2 1 5 5 H 1.48491 * 109.47724 * 29.99647 * 3 2 1 6 6 H 1.48505 * 109.47151 * 150.00036 * 3 2 1 7 7 C 1.38946 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00279 * 0.02562 * 7 2 1 9 9 N 1.37105 * 119.99918 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99757 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00388 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99504 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.34775 * 120.00236 * 179.97438 * 13 12 10 15 15 O 1.21618 * 120.00073 * 0.02562 * 14 13 12 16 16 C 1.47232 * 120.00331 * 179.97438 * 14 13 12 17 17 C 1.37004 * 127.19363 * 180.02562 * 16 14 13 18 18 N 1.33315 * 106.37501 * 180.02562 * 17 16 14 19 19 N 1.28514 * 109.44158 * 359.97438 * 18 17 16 20 20 N 1.28724 * 110.63693 * 0.02562 * 19 18 17 21 21 H 0.96991 * 126.03722 * 179.97438 * 20 19 18 22 22 H 0.96991 * 120.00192 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99746 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.47677 * 59.99933 * 12 10 9 25 25 H 1.09005 * 109.47543 * 299.99950 * 12 10 9 26 26 H 0.97001 * 119.99684 * 0.02562 * 13 12 10 27 27 H 1.08000 * 126.80852 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3800 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4208 0.0001 12 6 5.5608 -2.3704 0.0022 13 7 6.0492 -3.7515 0.0014 14 6 7.3743 -3.9978 0.0017 15 8 8.1646 -3.0734 0.0031 16 6 7.8652 -5.3859 0.0014 17 6 9.1702 -5.8028 0.0021 18 7 9.1390 -7.1356 0.0009 19 7 7.9175 -7.5348 0.0001 20 7 7.1120 -6.5307 0.0001 21 1 6.1432 -6.5764 -0.0008 22 1 -0.4850 0.8400 -0.0004 23 1 3.8649 -0.3632 0.0014 24 1 5.9235 -1.8569 0.8927 25 1 5.9249 -1.8561 -0.8873 26 1 5.4189 -4.4888 -0.0001 27 1 10.0498 -5.1760 0.0026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651005058.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:32 Heat of formation + Delta-G solvation = 26.763568 kcal Electronic energy + Delta-G solvation = -16001.891153 eV Core-core repulsion = 12990.342580 eV Total energy + Delta-G solvation = -3011.548573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.56804 -39.82291 -38.44683 -34.94384 -34.14705 -33.54270 -31.96718 -31.65304 -28.28530 -25.04484 -23.95027 -22.91877 -21.12494 -20.03388 -19.46483 -18.58600 -17.00334 -16.62345 -16.22705 -15.52087 -15.47452 -15.05897 -14.52127 -14.29968 -14.11222 -13.29978 -12.70191 -12.44016 -12.35315 -12.31676 -11.55015 -11.34481 -11.00374 -10.74845 -10.46789 -10.17958 -9.83677 -9.79845 -9.28141 -8.96849 -8.44344 -6.52861 -4.06467 0.66003 2.06319 2.21027 2.77587 2.87053 2.90097 2.95024 3.04589 3.38649 3.92572 4.10189 4.32744 4.49715 4.75871 4.92426 5.01263 5.45030 5.56201 5.57955 5.73346 6.09316 6.33552 7.20253 7.31640 7.78977 7.89359 8.01327 8.29914 8.68036 9.15611 9.46518 10.58816 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.057959 B = 0.004635 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.987922 B = 6040.127189 C = 6507.972214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.047 3.953 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.313 4.313 8 H 0.122 0.878 9 N -0.570 5.570 10 C 0.433 3.567 11 O -0.583 6.583 12 C 0.106 3.894 13 N -0.701 5.701 14 C 0.593 3.407 15 O -0.520 6.520 16 C -0.060 4.060 17 C 0.031 3.969 18 N -0.273 5.273 19 N -0.047 5.047 20 N -0.371 5.371 21 H 0.455 0.545 22 H 0.277 0.723 23 H 0.375 0.625 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.408 0.592 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.083 -4.886 -0.016 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.158 4.158 3 Si 0.706 3.294 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.442 4.442 8 H 0.140 0.860 9 N -0.207 5.207 10 C 0.219 3.781 11 O -0.468 6.468 12 C -0.021 4.021 13 N -0.355 5.355 14 C 0.376 3.624 15 O -0.395 6.395 16 C -0.195 4.195 17 C -0.129 4.129 18 N -0.138 5.138 19 N -0.030 5.030 20 N -0.099 5.099 21 H 0.302 0.698 22 H 0.088 0.912 23 H 0.209 0.791 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.245 0.755 27 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 13.238 -6.262 -0.015 14.645 hybrid contribution -0.602 2.208 0.015 2.288 sum 12.636 -4.054 0.000 13.270 Atomic orbital electron populations 1.69612 1.05755 1.28037 1.47378 1.25092 0.95564 0.98292 0.96888 0.86659 0.79899 0.83643 0.79226 1.19288 1.19849 1.19193 1.19440 0.78824 0.96866 1.49055 0.86011 1.42112 1.07791 1.06116 1.64703 1.19515 0.87808 0.85011 0.85745 1.90531 1.69087 1.30892 1.56268 1.21088 0.94249 0.82738 1.04046 1.45560 1.06153 1.10052 1.73686 1.16695 0.82541 0.85554 0.77596 1.90865 1.55313 1.43209 1.50097 1.22388 0.93092 0.88821 1.15177 1.23902 0.96314 0.91751 1.00934 1.74991 1.10719 1.11043 1.17019 1.78227 0.95526 1.12873 1.16355 1.45686 1.12061 1.04159 1.47986 0.69773 0.91210 0.79124 0.89001 0.89001 0.75450 0.77825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.93 13.96 55.50 0.77 -23.15 15 2 C 0.05 1.20 5.50 -17.47 -0.10 1.10 15 3 Si 0.88 18.05 27.74 -169.99 -4.71 13.34 15 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 5 H -0.27 -5.67 7.11 56.52 0.40 -5.26 15 6 H -0.27 -4.95 6.52 56.52 0.37 -4.58 15 7 C -0.31 -8.21 10.16 -14.93 -0.15 -8.36 15 8 H 0.12 3.65 7.39 -52.48 -0.39 3.26 15 9 N -0.57 -12.32 5.09 -10.96 -0.06 -12.38 15 10 C 0.43 8.64 7.85 -10.99 -0.09 8.56 15 11 O -0.58 -13.44 15.24 5.55 0.08 -13.36 15 12 C 0.11 1.58 6.15 -5.19 -0.03 1.55 15 13 N -0.70 -9.34 5.52 -62.63 -0.35 -9.68 15 14 C 0.59 7.73 7.81 -12.61 -0.10 7.63 15 15 O -0.52 -8.05 16.92 5.26 0.09 -7.96 15 16 C -0.06 -0.68 7.17 -82.33 -0.59 -1.27 15 17 C 0.03 0.34 11.87 -17.36 -0.21 0.13 15 18 N -0.27 -3.44 12.35 30.47 0.38 -3.07 15 19 N -0.05 -0.57 13.35 60.35 0.81 0.24 15 20 N -0.37 -3.68 6.98 33.31 0.23 -3.45 15 21 H 0.45 3.22 8.32 -190.33 -1.58 1.64 15 22 H 0.28 7.03 8.31 -40.82 -0.34 6.69 15 23 H 0.38 7.08 5.76 -40.82 -0.24 6.85 15 24 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.41 5.13 6.70 -40.82 -0.27 4.86 15 27 H 0.20 1.77 8.06 -52.49 -0.42 1.34 15 LS Contribution 255.20 15.07 3.85 3.85 Total: -1.00 -31.74 255.20 -3.08 -34.82 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -2.92 Total: 11.45 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.26 Total: 9.35 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 1.79 Total: -51.49 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.17 Total: -21.32 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -4.71 Total: 13.34 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.74 -3.08 -34.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651005058.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.587 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds