Wall clock time and date at job start Sun Mar 29 2020 22:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99439 * 2 1 4 4 H 1.48500 * 109.47241 * 269.99468 * 3 2 1 5 5 H 1.48491 * 109.47724 * 29.99647 * 3 2 1 6 6 H 1.48505 * 109.47151 * 150.00036 * 3 2 1 7 7 C 1.38946 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00279 * 0.02562 * 7 2 1 9 9 N 1.37105 * 119.99918 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99757 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00388 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99504 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.34775 * 120.00236 * 179.97438 * 13 12 10 15 15 O 1.21618 * 120.00073 * 0.02562 * 14 13 12 16 16 C 1.47232 * 120.00331 * 179.97438 * 14 13 12 17 17 C 1.37004 * 127.19363 * 180.02562 * 16 14 13 18 18 N 1.33315 * 106.37501 * 180.02562 * 17 16 14 19 19 N 1.28514 * 109.44158 * 359.97438 * 18 17 16 20 20 N 1.28724 * 110.63693 * 0.02562 * 19 18 17 21 21 H 0.96991 * 126.03722 * 179.97438 * 20 19 18 22 22 H 0.96991 * 120.00192 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99746 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.47677 * 59.99933 * 12 10 9 25 25 H 1.09005 * 109.47543 * 299.99950 * 12 10 9 26 26 H 0.97001 * 119.99684 * 0.02562 * 13 12 10 27 27 H 1.08000 * 126.80852 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3800 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4208 0.0001 12 6 5.5608 -2.3704 0.0022 13 7 6.0492 -3.7515 0.0014 14 6 7.3743 -3.9978 0.0017 15 8 8.1646 -3.0734 0.0031 16 6 7.8652 -5.3859 0.0014 17 6 9.1702 -5.8028 0.0021 18 7 9.1390 -7.1356 0.0009 19 7 7.9175 -7.5348 0.0001 20 7 7.1120 -6.5307 0.0001 21 1 6.1432 -6.5764 -0.0008 22 1 -0.4850 0.8400 -0.0004 23 1 3.8649 -0.3632 0.0014 24 1 5.9235 -1.8569 0.8927 25 1 5.9249 -1.8561 -0.8873 26 1 5.4189 -4.4888 -0.0001 27 1 10.0498 -5.1760 0.0026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651005058.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:32 Heat of formation + Delta-G solvation = -1.277985 kcal Electronic energy + Delta-G solvation = -16003.107126 eV Core-core repulsion = 12990.342580 eV Total energy + Delta-G solvation = -3012.764546 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.46066 -41.07040 -39.98125 -36.38956 -35.63943 -34.51857 -33.84728 -32.61033 -29.63800 -26.62606 -25.09310 -23.86528 -22.12500 -21.53727 -20.86468 -20.13778 -18.16906 -17.55276 -17.55107 -16.97699 -16.68643 -16.64787 -15.69401 -15.48813 -15.32685 -14.92964 -14.35988 -14.07919 -13.71598 -13.35003 -12.97379 -12.45666 -12.44810 -12.00799 -11.88380 -11.58498 -11.55001 -10.74187 -10.69440 -10.38860 -10.30511 -8.46239 -6.08781 -0.25291 1.15046 1.31311 1.34593 1.36880 1.44790 1.71631 1.76913 1.90058 2.20517 2.79874 3.10330 3.23398 3.55657 3.85634 3.98816 4.06253 4.39082 4.39352 4.91031 4.97224 5.46348 5.57033 5.86899 6.16496 6.46249 6.76944 6.77599 7.11902 7.27649 7.75901 8.69877 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.057959 B = 0.004635 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.987922 B = 6040.127189 C = 6507.972214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.616 6.616 12 C 0.117 3.883 13 N -0.702 5.702 14 C 0.605 3.395 15 O -0.541 6.541 16 C -0.065 4.065 17 C 0.037 3.963 18 N -0.294 5.294 19 N -0.058 5.058 20 N -0.355 5.355 21 H 0.466 0.534 22 H 0.281 0.719 23 H 0.393 0.607 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.411 0.589 27 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.630 -3.659 0.028 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.152 1.152 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.215 5.215 10 C 0.231 3.769 11 O -0.502 6.502 12 C -0.010 4.010 13 N -0.355 5.355 14 C 0.389 3.611 15 O -0.417 6.417 16 C -0.200 4.200 17 C -0.123 4.123 18 N -0.159 5.159 19 N -0.040 5.040 20 N -0.085 5.085 21 H 0.316 0.684 22 H 0.091 0.909 23 H 0.229 0.771 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.249 0.751 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 15.801 -5.074 0.030 16.596 hybrid contribution -1.405 1.646 -0.003 2.164 sum 14.396 -3.428 0.027 14.799 Atomic orbital electron populations 1.69781 1.08119 1.29489 1.49140 1.26094 0.96422 1.02719 0.95695 0.85445 0.79692 0.76938 0.80053 1.18144 1.20158 1.15168 1.19017 0.81009 0.95215 1.50785 0.91788 1.41916 1.06097 1.07552 1.65981 1.20481 0.90053 0.83889 0.82508 1.90527 1.70788 1.32261 1.56641 1.21030 0.89590 0.84057 1.06322 1.45535 1.06489 1.09616 1.73903 1.16659 0.81903 0.85825 0.76714 1.90861 1.55674 1.43988 1.51135 1.22159 0.93296 0.88313 1.16213 1.24323 0.97017 0.91419 0.99587 1.75000 1.11007 1.11860 1.17983 1.78203 0.95772 1.13344 1.16666 1.45687 1.12589 1.03484 1.46711 0.68431 0.90949 0.77078 0.86677 0.86596 0.75065 0.75704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.71 13.96 21.66 0.30 -52.40 15 2 C -0.01 -0.48 5.50 84.92 0.47 -0.01 15 3 Si 0.96 35.99 27.74 68.60 1.90 37.90 15 4 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 5 H -0.28 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.23 -7.10 6.52 99.48 0.65 -6.45 15 7 C -0.33 -17.80 10.16 84.04 0.85 -16.94 15 8 H 0.06 4.10 7.39 -2.91 -0.02 4.07 15 9 N -0.58 -24.19 5.09 -306.99 -1.56 -25.75 15 10 C 0.44 17.08 7.85 87.66 0.69 17.77 15 11 O -0.62 -28.52 15.24 -3.04 -0.05 -28.57 15 12 C 0.12 3.10 6.15 85.63 0.53 3.63 15 13 N -0.70 -16.87 5.52 -470.30 -2.60 -19.47 15 14 C 0.60 14.09 7.81 86.61 0.68 14.76 15 15 O -0.54 -15.02 16.92 -4.09 -0.07 -15.09 15 16 C -0.06 -1.31 7.17 40.40 0.29 -1.02 15 17 C 0.04 0.73 11.87 84.18 1.00 1.73 15 18 N -0.29 -6.94 12.35 -57.50 -0.71 -7.65 15 19 N -0.06 -1.30 13.35 37.02 0.49 -0.80 15 20 N -0.35 -6.41 6.98 -48.52 -0.34 -6.75 15 21 H 0.47 5.86 8.32 -219.90 -1.83 4.03 15 22 H 0.28 14.65 8.31 -92.71 -0.77 13.88 15 23 H 0.39 13.60 5.76 -92.71 -0.53 13.06 15 24 H 0.12 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.12 2.65 8.14 -2.38 -0.02 2.63 15 26 H 0.41 9.59 6.70 -92.71 -0.62 8.97 15 27 H 0.23 3.29 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -70.95 255.20 0.10 -70.86 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -1.78 Total: 27.82 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 4.50 Total: 19.92 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.41 Total: -112.83 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.12 Total: -43.66 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 1.90 Total: 37.90 kcal Total: -70.95 0.10 -70.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651005058.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.578 kcal (2) G-P(sol) polarization free energy of solvation -70.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds