Wall clock time and date at job start Sun Mar 29 2020 21:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36540 * 127.14422 * 2 1 4 4 S 1.76198 * 126.48380 * 0.03028 * 3 2 1 5 5 C 1.80992 * 100.00165 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47245 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00091 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99525 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99936 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47303 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47225 * 120.00218 * 10 8 6 13 13 H 1.48504 * 109.47103 * 239.99733 * 10 8 6 14 14 N 1.31275 * 107.03160 * 180.02562 * 3 2 1 15 15 N 1.28528 * 109.85671 * 359.73551 * 14 3 2 16 16 C 1.30293 * 110.07866 * 0.44770 * 15 14 3 17 17 C 1.50706 * 126.34053 * 179.82197 * 16 15 14 18 18 C 1.53002 * 117.49668 * 59.69357 * 17 16 15 19 19 C 1.53000 * 60.02940 * 252.51929 * 18 17 16 20 20 H 1.09008 * 109.46890 * 269.96888 * 1 2 3 21 21 H 1.08999 * 109.47317 * 29.96691 * 1 2 3 22 22 H 1.09001 * 109.47122 * 149.97026 * 1 2 3 23 23 H 1.09001 * 109.47001 * 299.99755 * 5 4 3 24 24 H 1.09003 * 109.47371 * 59.99840 * 5 4 3 25 25 H 0.97005 * 119.99158 * 180.02562 * 9 8 6 26 26 H 1.09000 * 115.55924 * 205.37762 * 17 16 15 27 27 H 1.09002 * 117.49918 * 145.01964 * 18 17 16 28 28 H 1.09002 * 117.49754 * 0.02562 * 18 17 16 29 29 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 30 30 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2895 1.0884 0.0000 4 16 1.7928 2.7789 0.0007 5 6 3.4144 3.5829 0.0011 6 6 3.2333 5.0790 0.0011 7 1 2.2398 5.5027 0.0014 8 6 4.3358 5.9069 0.0019 9 7 5.5456 5.3909 0.0032 10 14 4.1114 7.7613 0.0013 11 1 2.6620 8.0845 -0.0008 12 1 4.7457 8.3372 1.2141 13 1 4.7480 8.3366 -1.2108 14 7 3.5222 0.6370 -0.0006 15 7 3.5164 -0.6483 0.0047 16 6 2.2907 -1.0901 -0.0007 17 6 1.8623 -2.5350 -0.0011 18 6 2.3124 -3.4056 1.1738 19 6 2.9485 -3.5941 -0.2049 20 1 -0.3633 -0.0006 1.0277 21 1 -0.3634 0.8903 -0.5133 22 1 -0.3633 -0.8897 -0.5143 23 1 3.9681 3.2836 0.8910 24 1 3.9682 3.2844 -0.8890 25 1 6.3212 5.9734 0.0041 26 1 0.8789 -2.7338 -0.4270 27 1 1.6252 -4.1772 1.5208 28 1 2.9181 -2.9332 1.9472 29 1 3.9726 -3.2454 -0.3386 30 1 2.6800 -4.4900 -0.7647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072737305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:54 Heat of formation + Delta-G solvation = 93.735524 kcal Electronic energy + Delta-G solvation = -14242.585922 eV Core-core repulsion = 11780.234686 eV Total energy + Delta-G solvation = -2462.351237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.46655 -37.20694 -34.69783 -33.18150 -30.10353 -28.55332 -27.45026 -24.13208 -23.09825 -22.56437 -22.04559 -19.95424 -17.51191 -16.62709 -16.14411 -15.95264 -15.26861 -14.81147 -14.46515 -13.38247 -13.22245 -13.09976 -12.44059 -12.37088 -12.18880 -11.65988 -11.23538 -11.13605 -10.91500 -10.84078 -10.68532 -10.50412 -10.03738 -9.92650 -9.64629 -9.22087 -9.21055 -8.60189 -6.86058 -6.19658 -4.28119 1.83698 1.95512 2.88816 3.13952 3.24433 3.31276 3.34015 3.48888 3.81180 4.29334 4.32977 4.57030 4.74029 4.77496 4.87942 5.10003 5.16633 5.34646 5.48563 5.50545 5.72837 5.90028 6.05664 6.13653 6.35288 7.01435 7.12588 7.23796 7.68086 7.93035 8.72877 9.09551 9.35431 10.90764 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.054007 B = 0.005172 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.331143 B = 5412.566535 C = 5839.209643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.473 5.473 3 C 0.178 3.822 4 S -0.058 6.058 5 C 0.080 3.920 6 C -0.526 4.526 7 H 0.068 0.932 8 C 0.071 3.929 9 N -0.881 5.881 10 Si 0.908 3.092 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.280 1.280 14 N -0.290 5.290 15 N -0.286 5.286 16 C 0.189 3.811 17 C -0.080 4.080 18 C -0.160 4.160 19 C -0.150 4.150 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.267 0.733 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 -14.376 0.335 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.168 5.168 3 C -0.196 4.196 4 S 0.171 5.829 5 C -0.068 4.068 6 C -0.567 4.567 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.517 5.517 10 Si 0.735 3.265 11 H -0.194 1.194 12 H -0.206 1.206 13 H -0.206 1.206 14 N -0.133 5.133 15 N -0.126 5.126 16 C -0.080 4.080 17 C -0.101 4.101 18 C -0.199 4.199 19 C -0.188 4.188 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.137 0.863 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.519 -13.828 0.332 17.377 hybrid contribution -0.295 0.450 -0.029 0.539 sum -10.814 -13.378 0.303 17.205 Atomic orbital electron populations 1.22014 0.75713 1.04804 1.03942 1.46224 1.08334 1.05113 1.57079 1.27407 0.89593 0.96784 1.05805 1.85377 1.21281 0.84835 1.91443 1.21335 0.85878 0.97004 1.02564 1.20628 0.93594 0.88292 1.54144 0.91417 1.24948 0.94686 0.99468 0.94388 1.70004 0.97804 1.35701 1.48237 0.86283 0.78522 0.83879 0.77858 1.19428 1.20620 1.20623 1.74835 1.15893 1.01934 1.20663 1.73861 1.17064 1.03889 1.17751 1.23797 0.87146 0.90078 1.07008 1.19980 1.00072 0.83612 1.06395 1.23065 1.03484 1.01221 0.92099 1.23023 0.98660 0.98243 0.98899 0.90154 0.88829 0.89504 0.92885 0.92892 0.92321 0.86265 0.88044 0.88189 0.87158 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.92 59.85 0.65 1.51 16 2 N -0.47 -7.90 3.21 -120.90 -0.39 -8.29 16 3 C 0.18 3.76 8.07 -88.34 -0.71 3.04 16 4 S -0.06 -1.25 21.72 -107.50 -2.34 -3.59 16 5 C 0.08 2.13 4.99 36.01 0.18 2.31 16 6 C -0.53 -14.63 9.13 -34.44 -0.31 -14.95 16 7 H 0.07 1.82 7.71 -52.49 -0.40 1.41 16 8 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 9 N -0.88 -26.01 13.29 55.43 0.74 -25.28 16 10 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 N -0.29 -6.89 11.60 30.68 0.36 -6.53 16 15 N -0.29 -6.00 11.79 33.00 0.39 -5.61 16 16 C 0.19 3.17 7.59 -154.00 -1.17 2.00 16 17 C -0.08 -0.91 6.00 -91.73 -0.55 -1.46 16 18 C -0.16 -1.57 10.23 -26.73 -0.27 -1.84 16 19 C -0.15 -1.53 10.15 -26.70 -0.27 -1.80 16 20 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 21 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 22 H 0.09 0.67 7.44 -51.93 -0.39 0.28 16 23 H 0.05 1.53 8.14 -51.92 -0.42 1.11 16 24 H 0.05 1.53 8.14 -51.91 -0.42 1.10 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 26 H 0.12 1.02 7.54 -51.93 -0.39 0.63 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.11 1.36 7.92 -51.92 -0.41 0.94 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 280.64 15.07 4.23 4.23 Total: -1.00 -33.04 280.64 -8.26 -41.30 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.67 Total: -2.96 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.55 Total: -9.32 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 1.09 Total: -45.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.34 Total: -3.59 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.04 -8.26 -41.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072737305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.038 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds