Wall clock time and date at job start Sun Mar 29 2020 21:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36540 * 127.14422 * 2 1 4 4 S 1.76198 * 126.48380 * 0.03028 * 3 2 1 5 5 C 1.80992 * 100.00165 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47245 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00091 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99525 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99936 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47303 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47225 * 120.00218 * 10 8 6 13 13 H 1.48504 * 109.47103 * 239.99733 * 10 8 6 14 14 N 1.31275 * 107.03160 * 180.02562 * 3 2 1 15 15 N 1.28528 * 109.85671 * 359.73551 * 14 3 2 16 16 C 1.30293 * 110.07866 * 0.44770 * 15 14 3 17 17 C 1.50706 * 126.34053 * 179.82197 * 16 15 14 18 18 C 1.53002 * 117.49668 * 59.69357 * 17 16 15 19 19 C 1.53000 * 60.02940 * 252.51929 * 18 17 16 20 20 H 1.09008 * 109.46890 * 269.96888 * 1 2 3 21 21 H 1.08999 * 109.47317 * 29.96691 * 1 2 3 22 22 H 1.09001 * 109.47122 * 149.97026 * 1 2 3 23 23 H 1.09001 * 109.47001 * 299.99755 * 5 4 3 24 24 H 1.09003 * 109.47371 * 59.99840 * 5 4 3 25 25 H 0.97005 * 119.99158 * 180.02562 * 9 8 6 26 26 H 1.09000 * 115.55924 * 205.37762 * 17 16 15 27 27 H 1.09002 * 117.49918 * 145.01964 * 18 17 16 28 28 H 1.09002 * 117.49754 * 0.02562 * 18 17 16 29 29 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 30 30 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2895 1.0884 0.0000 4 16 1.7928 2.7789 0.0007 5 6 3.4144 3.5829 0.0011 6 6 3.2333 5.0790 0.0011 7 1 2.2398 5.5027 0.0014 8 6 4.3358 5.9069 0.0019 9 7 5.5456 5.3909 0.0032 10 14 4.1114 7.7613 0.0013 11 1 2.6620 8.0845 -0.0008 12 1 4.7457 8.3372 1.2141 13 1 4.7480 8.3366 -1.2108 14 7 3.5222 0.6370 -0.0006 15 7 3.5164 -0.6483 0.0047 16 6 2.2907 -1.0901 -0.0007 17 6 1.8623 -2.5350 -0.0011 18 6 2.3124 -3.4056 1.1738 19 6 2.9485 -3.5941 -0.2049 20 1 -0.3633 -0.0006 1.0277 21 1 -0.3634 0.8903 -0.5133 22 1 -0.3633 -0.8897 -0.5143 23 1 3.9681 3.2836 0.8910 24 1 3.9682 3.2844 -0.8890 25 1 6.3212 5.9734 0.0041 26 1 0.8789 -2.7338 -0.4270 27 1 1.6252 -4.1772 1.5208 28 1 2.9181 -2.9332 1.9472 29 1 3.9726 -3.2454 -0.3386 30 1 2.6800 -4.4900 -0.7647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072737305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:53 Heat of formation + Delta-G solvation = 73.398241 kcal Electronic energy + Delta-G solvation = -14243.467813 eV Core-core repulsion = 11780.234686 eV Total energy + Delta-G solvation = -2463.233128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.92757 -38.09519 -36.02162 -35.32288 -31.61994 -30.68427 -28.53831 -25.61978 -24.85109 -23.76988 -23.18639 -21.14900 -19.09123 -18.29748 -17.63927 -17.38868 -16.61367 -16.50132 -15.53448 -14.95130 -14.61050 -14.41038 -14.33347 -14.09577 -13.21808 -12.84400 -12.78436 -12.63519 -12.44416 -12.32799 -12.18075 -11.71065 -11.63562 -11.43575 -11.27626 -11.11175 -10.81634 -10.51215 -8.58423 -8.33707 -6.52286 0.20078 0.55797 1.39477 1.42633 1.43339 1.58061 1.64754 1.71580 2.36503 2.91364 3.00876 3.25221 3.60595 3.85731 3.92898 4.06767 4.27622 4.30716 4.56526 4.72979 4.78582 4.86481 4.88528 4.96648 5.00215 5.15148 5.28702 5.51561 5.77070 5.78974 6.57300 7.17743 7.58188 8.78950 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.054007 B = 0.005172 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.331143 B = 5412.566535 C = 5839.209643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.464 5.464 3 C 0.150 3.850 4 S -0.004 6.004 5 C 0.079 3.921 6 C -0.545 4.545 7 H 0.078 0.922 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.986 3.014 11 H -0.255 1.255 12 H -0.274 1.274 13 H -0.274 1.274 14 N -0.343 5.343 15 N -0.335 5.335 16 C 0.212 3.788 17 C -0.094 4.094 18 C -0.145 4.145 19 C -0.149 4.149 20 H 0.101 0.899 21 H 0.094 0.906 22 H 0.129 0.871 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.271 0.729 26 H 0.163 0.837 27 H 0.142 0.858 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 -15.520 0.294 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.158 5.158 3 C -0.226 4.226 4 S 0.225 5.775 5 C -0.070 4.070 6 C -0.584 4.584 7 H 0.096 0.904 8 C -0.188 4.188 9 N -0.562 5.562 10 Si 0.808 3.192 11 H -0.178 1.178 12 H -0.199 1.199 13 H -0.199 1.199 14 N -0.187 5.187 15 N -0.174 5.174 16 C -0.058 4.058 17 C -0.114 4.114 18 C -0.183 4.183 19 C -0.187 4.187 20 H 0.119 0.881 21 H 0.113 0.887 22 H 0.148 0.852 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.180 0.820 27 H 0.160 0.840 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.626 -14.996 0.293 20.264 hybrid contribution 0.611 0.581 -0.005 0.843 sum -13.015 -14.415 0.288 19.424 Atomic orbital electron populations 1.22559 0.72021 1.07065 1.06030 1.46537 1.10308 1.03471 1.55488 1.27260 0.90191 0.97572 1.07554 1.84690 1.16005 0.84754 1.92064 1.20893 0.89113 0.97918 0.99047 1.21008 0.94278 0.88874 1.54218 0.90406 1.26058 0.94106 1.05225 0.93370 1.70153 0.98966 1.37965 1.49138 0.85094 0.79254 0.76747 0.78100 1.17837 1.19925 1.19928 1.74707 1.18109 1.03735 1.22112 1.73757 1.19948 1.02912 1.20798 1.24859 0.86053 0.92262 1.02675 1.20470 1.02266 0.80162 1.08504 1.23143 1.03267 1.00879 0.91000 1.23110 0.96864 0.98810 0.99896 0.88102 0.88686 0.85242 0.96581 0.96569 0.91988 0.81959 0.84011 0.90753 0.90238 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 10.92 127.77 1.39 2.56 16 2 N -0.46 -14.92 3.21 -536.43 -1.72 -16.64 16 3 C 0.15 6.49 8.07 179.55 1.45 7.94 16 4 S 0.00 -0.17 21.72 -56.49 -1.23 -1.39 16 5 C 0.08 4.46 4.99 71.24 0.36 4.82 16 6 C -0.54 -31.08 9.13 25.60 0.23 -30.85 16 7 H 0.08 4.18 7.71 -2.91 -0.02 4.16 16 8 C 0.01 0.80 5.46 84.65 0.46 1.26 16 9 N -0.92 -56.78 13.29 21.45 0.28 -56.49 16 10 Si 0.99 43.41 29.54 68.60 2.03 45.44 16 11 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 14 N -0.34 -17.23 11.60 -56.86 -0.66 -17.89 16 15 N -0.33 -14.59 11.79 -49.52 -0.58 -15.17 16 16 C 0.21 6.89 7.59 137.64 1.04 7.94 16 17 C -0.09 -1.82 6.00 -11.51 -0.07 -1.89 16 18 C -0.14 -2.36 10.23 30.60 0.31 -2.05 16 19 C -0.15 -2.65 10.15 30.62 0.31 -2.34 16 20 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 21 H 0.09 1.75 7.86 -2.39 -0.02 1.73 16 22 H 0.13 1.29 7.44 -2.39 -0.02 1.27 16 23 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 26 H 0.16 1.79 7.54 -2.39 -0.02 1.77 16 27 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.95 7.92 -2.38 -0.02 1.93 16 30 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -78.10 280.64 4.75 -73.35 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.14 Total: 1.40 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 5.49 Total: -12.61 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -2.68 Total: -106.20 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.23 Total: -1.39 kcal Total: -78.10 4.75 -73.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072737305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.753 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds