Wall clock time and date at job start Sun Mar 29 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33916 * 125.60809 * 2 1 4 4 C 1.34942 * 109.37856 * 180.14853 * 3 2 1 5 5 C 1.46463 * 125.99381 * 179.88669 * 4 3 2 6 6 O 1.21622 * 119.99833 * 179.97438 * 5 4 3 7 7 O 1.34894 * 120.00281 * 359.69739 * 5 4 3 8 8 C 1.36646 * 108.00406 * 359.62847 * 4 3 2 9 9 C 1.35165 * 125.60833 * 179.73907 * 2 1 3 10 10 C 1.50698 * 126.43862 * 0.02562 * 9 2 1 11 11 N 1.46504 * 109.47058 * 80.00310 * 10 9 2 12 12 C 1.46502 * 119.99922 * 270.00190 * 11 10 9 13 13 C 1.36935 * 120.00291 * 89.99832 * 11 10 9 14 14 H 1.08003 * 119.99414 * 22.33158 * 13 11 10 15 15 C 1.38804 * 120.00410 * 202.32709 * 13 11 10 16 16 N 1.31617 * 120.00002 * 11.48906 * 15 13 11 17 17 Si 1.86799 * 120.00340 * 191.48036 * 15 13 11 18 18 H 1.48497 * 109.47131 * 90.00223 * 17 15 13 19 19 H 1.48497 * 109.47408 * 210.00443 * 17 15 13 20 20 H 1.48501 * 109.47266 * 330.00743 * 17 15 13 21 21 H 1.08996 * 109.47088 * 270.26330 * 1 2 3 22 22 H 1.09000 * 109.46971 * 30.26260 * 1 2 3 23 23 H 1.09002 * 109.47220 * 150.26092 * 1 2 3 24 24 H 0.96703 * 116.99868 * 179.97438 * 7 5 4 25 25 H 1.08003 * 126.64352 * 180.22368 * 8 4 3 26 26 H 1.08997 * 109.47896 * 200.00020 * 10 9 2 27 27 H 1.09000 * 109.47040 * 320.00492 * 10 9 2 28 28 H 1.09002 * 109.47017 * 93.39020 * 12 11 10 29 29 H 1.09004 * 109.47045 * 213.38929 * 12 11 10 30 30 H 1.09002 * 109.47415 * 333.39323 * 12 11 10 31 31 H 0.97000 * 120.00513 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2867 1.0888 0.0000 4 6 3.5824 0.7116 -0.0033 5 6 4.7400 1.6088 -0.0067 6 8 5.8659 1.1488 -0.0091 7 8 4.5575 2.9454 -0.0129 8 6 3.6247 -0.6542 0.0030 9 6 2.2940 -1.0989 0.0050 10 6 1.8295 -2.5325 0.0110 11 7 1.4514 -2.9290 -1.3477 12 6 0.0736 -2.7411 -1.8089 13 6 2.3857 -3.4751 -2.1867 14 1 3.2691 -3.9439 -1.7789 15 6 2.1974 -3.4263 -3.5611 16 7 1.2498 -2.6671 -4.0689 17 14 3.2892 -4.4378 -4.6899 18 1 2.6772 -5.7739 -4.9036 19 1 3.4301 -3.7435 -5.9950 20 1 4.6281 -4.6004 -4.0686 21 1 -0.3633 0.0047 1.0276 22 1 -0.3633 0.8876 -0.5179 23 1 -0.3634 -0.8923 -0.5098 24 1 5.3519 3.4969 -0.0146 25 1 4.5108 -1.2716 0.0058 26 1 2.6359 -3.1744 0.3655 27 1 0.9683 -2.6326 0.6716 28 1 -0.0114 -1.7810 -2.3181 29 1 -0.1913 -3.5427 -2.4985 30 1 -0.6017 -2.7597 -0.9535 31 1 1.1184 -2.6326 -5.0294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738957131.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:11 Heat of formation + Delta-G solvation = -52.080469 kcal Electronic energy + Delta-G solvation = -17132.526926 eV Core-core repulsion = 14188.807012 eV Total energy + Delta-G solvation = -2943.719915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.25654 -39.72592 -36.09022 -35.92255 -33.06569 -31.72407 -30.74122 -27.95519 -25.99867 -25.71734 -22.94425 -21.67074 -20.63648 -19.52675 -17.73563 -17.22322 -16.64298 -16.25842 -15.07986 -14.99364 -14.73910 -13.76387 -13.52096 -13.28268 -13.05391 -12.76428 -12.60291 -12.55873 -11.78013 -11.55618 -11.39261 -11.00723 -10.90503 -10.81037 -10.62287 -10.28979 -10.01659 -9.97030 -9.25228 -8.57436 -7.98663 -6.83414 -5.76254 -3.21230 1.19030 2.68876 2.76236 3.26355 3.38655 3.44734 3.46013 3.54292 4.50086 5.10925 5.31146 5.37769 5.49039 5.65749 5.71661 5.77230 5.85266 6.06264 6.24203 6.39623 6.43247 6.51487 6.59124 6.66517 6.93684 7.32325 7.39238 7.64997 7.79013 7.96370 8.36027 9.20025 9.81726 10.29630 11.29239 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.008036 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.854685 B = 3483.541571 C = 4194.654989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.035 3.965 3 O -0.161 6.161 4 C -0.102 4.102 5 C 0.576 3.424 6 O -0.506 6.506 7 O -0.509 6.509 8 C -0.070 4.070 9 C -0.185 4.185 10 C 0.208 3.792 11 N -0.592 5.592 12 C 0.160 3.840 13 C -0.254 4.254 14 H 0.071 0.929 15 C 0.003 3.997 16 N -0.907 5.907 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.106 0.894 24 H 0.412 0.588 25 H 0.157 0.843 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.049 0.951 30 H -0.001 1.001 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 6.844 9.077 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.018 4.018 3 O -0.057 6.057 4 C -0.151 4.151 5 C 0.422 3.578 6 O -0.396 6.396 7 O -0.321 6.321 8 C -0.091 4.091 9 C -0.190 4.190 10 C 0.081 3.919 11 N -0.313 5.313 12 C 0.015 3.985 13 C -0.384 4.384 14 H 0.088 0.912 15 C -0.195 4.195 16 N -0.552 5.552 17 Si 0.735 3.265 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.204 1.204 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.124 0.876 24 H 0.270 0.730 25 H 0.174 0.826 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.018 0.982 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.423 6.769 8.875 11.170 hybrid contribution 1.328 0.006 -0.980 1.650 sum 0.906 6.775 7.895 10.443 Atomic orbital electron populations 1.20607 0.84842 1.05398 1.03073 1.22654 0.94018 0.83505 1.01659 1.83984 1.15298 1.34888 1.71562 1.20248 0.81453 0.92386 1.21005 1.18919 0.86395 0.80286 0.72219 1.90968 1.23477 1.77330 1.47841 1.84695 1.42935 1.18444 1.85981 1.21879 0.98993 0.91617 0.96602 1.21678 0.91598 0.99749 1.05928 1.19411 0.97684 0.86525 0.88317 1.44108 1.06740 1.70244 1.10211 1.20928 0.82487 1.00982 0.94068 1.19243 1.02819 1.29097 0.87228 0.91154 1.25043 0.98625 0.98753 0.97097 1.70048 1.34229 1.39649 1.11253 0.86236 0.80259 0.79639 0.80327 1.21413 1.21765 1.20416 0.90310 0.90729 0.87601 0.72967 0.82551 0.92351 0.92970 0.95255 0.93209 0.98234 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.19 36.01 0.37 -0.85 16 2 C 0.03 0.64 7.31 -35.40 -0.26 0.38 16 3 O -0.16 -3.05 10.67 4.72 0.05 -3.00 16 4 C -0.10 -1.92 7.18 -36.85 -0.26 -2.19 16 5 C 0.58 9.75 8.30 34.04 0.28 10.03 16 6 O -0.51 -9.38 17.65 -19.36 -0.34 -9.73 16 7 O -0.51 -6.74 13.44 -42.47 -0.57 -7.31 16 8 C -0.07 -1.38 10.57 -39.38 -0.42 -1.79 16 9 C -0.18 -3.65 5.72 -104.94 -0.60 -4.25 16 10 C 0.21 4.14 5.75 -5.19 -0.03 4.11 16 11 N -0.59 -14.33 2.91 -182.50 -0.53 -14.86 16 12 C 0.16 3.70 7.38 59.85 0.44 4.14 16 13 C -0.25 -6.88 9.67 -15.06 -0.15 -7.03 16 14 H 0.07 1.87 7.85 -52.48 -0.41 1.46 16 15 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 16 N -0.91 -26.16 10.60 55.49 0.59 -25.57 16 17 Si 0.91 21.98 29.57 -169.99 -5.03 16.95 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.11 1.68 4.40 -51.93 -0.23 1.45 16 24 H 0.41 3.06 9.11 45.56 0.42 3.47 16 25 H 0.16 2.91 8.06 -52.48 -0.42 2.48 16 26 H 0.06 1.12 8.03 -51.93 -0.42 0.71 16 27 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 28 H 0.03 0.73 6.98 -51.93 -0.36 0.37 16 29 H 0.05 1.26 7.13 -51.93 -0.37 0.89 16 30 H 0.00 -0.01 7.01 -51.93 -0.36 -0.38 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 274.38 15.07 4.13 4.13 Total: -1.00 -32.61 274.38 -4.96 -37.57 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.55 Total: -0.76 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.71 Total: 2.56 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.06 Total: -40.43 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.86 Total: -20.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.61 -4.96 -37.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738957131.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.507 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds