Wall clock time and date at job start Sun Mar 29 2020 22:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33916 * 125.60809 * 2 1 4 4 C 1.34942 * 109.37856 * 180.14853 * 3 2 1 5 5 C 1.46463 * 125.99381 * 179.88669 * 4 3 2 6 6 O 1.21622 * 119.99833 * 179.97438 * 5 4 3 7 7 O 1.34894 * 120.00281 * 359.69739 * 5 4 3 8 8 C 1.36646 * 108.00406 * 359.62847 * 4 3 2 9 9 C 1.35165 * 125.60833 * 179.73907 * 2 1 3 10 10 C 1.50698 * 126.43862 * 0.02562 * 9 2 1 11 11 N 1.46504 * 109.47058 * 80.00310 * 10 9 2 12 12 C 1.46502 * 119.99922 * 270.00190 * 11 10 9 13 13 C 1.36935 * 120.00291 * 89.99832 * 11 10 9 14 14 H 1.08003 * 119.99414 * 22.33158 * 13 11 10 15 15 C 1.38804 * 120.00410 * 202.32709 * 13 11 10 16 16 N 1.31617 * 120.00002 * 11.48906 * 15 13 11 17 17 Si 1.86799 * 120.00340 * 191.48036 * 15 13 11 18 18 H 1.48497 * 109.47131 * 90.00223 * 17 15 13 19 19 H 1.48497 * 109.47408 * 210.00443 * 17 15 13 20 20 H 1.48501 * 109.47266 * 330.00743 * 17 15 13 21 21 H 1.08996 * 109.47088 * 270.26330 * 1 2 3 22 22 H 1.09000 * 109.46971 * 30.26260 * 1 2 3 23 23 H 1.09002 * 109.47220 * 150.26092 * 1 2 3 24 24 H 0.96703 * 116.99868 * 179.97438 * 7 5 4 25 25 H 1.08003 * 126.64352 * 180.22368 * 8 4 3 26 26 H 1.08997 * 109.47896 * 200.00020 * 10 9 2 27 27 H 1.09000 * 109.47040 * 320.00492 * 10 9 2 28 28 H 1.09002 * 109.47017 * 93.39020 * 12 11 10 29 29 H 1.09004 * 109.47045 * 213.38929 * 12 11 10 30 30 H 1.09002 * 109.47415 * 333.39323 * 12 11 10 31 31 H 0.97000 * 120.00513 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2867 1.0888 0.0000 4 6 3.5824 0.7116 -0.0033 5 6 4.7400 1.6088 -0.0067 6 8 5.8659 1.1488 -0.0091 7 8 4.5575 2.9454 -0.0129 8 6 3.6247 -0.6542 0.0030 9 6 2.2940 -1.0989 0.0050 10 6 1.8295 -2.5325 0.0110 11 7 1.4514 -2.9290 -1.3477 12 6 0.0736 -2.7411 -1.8089 13 6 2.3857 -3.4751 -2.1867 14 1 3.2691 -3.9439 -1.7789 15 6 2.1974 -3.4263 -3.5611 16 7 1.2498 -2.6671 -4.0689 17 14 3.2892 -4.4378 -4.6899 18 1 2.6772 -5.7739 -4.9036 19 1 3.4301 -3.7435 -5.9950 20 1 4.6281 -4.6004 -4.0686 21 1 -0.3633 0.0047 1.0276 22 1 -0.3633 0.8876 -0.5179 23 1 -0.3634 -0.8923 -0.5098 24 1 5.3519 3.4969 -0.0146 25 1 4.5108 -1.2716 0.0058 26 1 2.6359 -3.1744 0.3655 27 1 0.9683 -2.6326 0.6716 28 1 -0.0114 -1.7810 -2.3181 29 1 -0.1913 -3.5427 -2.4985 30 1 -0.6017 -2.7597 -0.9535 31 1 1.1184 -2.6326 -5.0294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738957131.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:10 Heat of formation + Delta-G solvation = -74.010724 kcal Electronic energy + Delta-G solvation = -17133.477894 eV Core-core repulsion = 14188.807012 eV Total energy + Delta-G solvation = -2944.670882 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.70392 -41.00993 -37.75242 -37.25864 -34.74125 -33.14926 -32.55248 -29.39565 -27.76891 -27.45835 -24.31134 -23.45784 -22.13100 -20.92701 -19.10868 -18.69798 -18.47751 -17.67993 -16.77385 -16.37945 -16.28699 -15.51695 -15.12639 -14.85488 -14.65931 -14.21899 -14.06191 -13.70444 -13.30723 -13.15787 -12.83184 -12.76628 -12.65358 -12.42658 -12.18874 -12.02139 -11.94430 -11.82314 -10.79066 -10.62355 -9.43050 -8.79212 -7.82677 -5.28561 -0.20726 1.26849 1.42917 1.46134 1.46771 1.54375 1.84102 2.27344 2.52322 3.33166 3.80396 3.85509 3.88874 4.14785 4.37793 4.49096 4.71397 4.73280 4.82455 4.88860 5.00074 5.05276 5.14349 5.34204 5.43267 5.48960 5.65199 5.79976 5.97866 6.34696 6.83030 7.17828 7.89056 8.29977 9.20441 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.008036 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.854685 B = 3483.541571 C = 4194.654989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.040 3.960 3 O -0.163 6.163 4 C -0.114 4.114 5 C 0.584 3.416 6 O -0.527 6.527 7 O -0.498 6.498 8 C -0.088 4.088 9 C -0.209 4.209 10 C 0.209 3.791 11 N -0.607 5.607 12 C 0.174 3.826 13 C -0.257 4.257 14 H 0.070 0.930 15 C -0.051 4.051 16 N -0.935 5.935 17 Si 0.961 3.039 18 H -0.283 1.283 19 H -0.299 1.299 20 H -0.273 1.273 21 H 0.117 0.883 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.438 0.562 25 H 0.157 0.843 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.006 0.994 29 H 0.017 0.983 30 H 0.043 0.957 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 7.467 10.207 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.014 4.014 3 O -0.060 6.060 4 C -0.163 4.163 5 C 0.430 3.570 6 O -0.420 6.420 7 O -0.313 6.313 8 C -0.108 4.108 9 C -0.213 4.213 10 C 0.083 3.917 11 N -0.329 5.329 12 C 0.029 3.971 13 C -0.388 4.388 14 H 0.088 0.912 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.790 3.210 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.198 1.198 21 H 0.135 0.865 22 H 0.105 0.895 23 H 0.113 0.887 24 H 0.301 0.699 25 H 0.174 0.826 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.025 0.975 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.648 7.419 10.044 12.504 hybrid contribution 1.398 -0.104 -1.212 1.854 sum 0.751 7.316 8.832 11.493 Atomic orbital electron populations 1.20765 0.82130 1.05382 1.05491 1.23330 0.95538 0.82970 0.99545 1.83994 1.15398 1.35144 1.71459 1.20567 0.82014 0.92773 1.20981 1.18645 0.85356 0.81209 0.71743 1.90960 1.24012 1.78017 1.48961 1.84632 1.44749 1.16856 1.85030 1.22032 0.99268 0.92346 0.97168 1.21637 0.91990 0.99907 1.07773 1.19514 0.99080 0.86626 0.86457 1.44288 1.06687 1.70726 1.11196 1.20707 0.83039 0.98440 0.94897 1.19534 1.02916 1.28473 0.87846 0.91238 1.25699 1.00196 1.00238 0.98472 1.70202 1.35851 1.41310 1.10824 0.85354 0.79081 0.78338 0.78235 1.20942 1.22603 1.19760 0.86518 0.89518 0.88687 0.69875 0.82555 0.92180 0.89803 0.97544 0.96395 0.93921 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.15 10.19 71.24 0.73 -1.42 16 2 C 0.04 1.38 7.31 24.98 0.18 1.56 16 3 O -0.16 -5.94 10.67 -4.96 -0.05 -5.99 16 4 C -0.11 -4.21 7.18 24.04 0.17 -4.04 16 5 C 0.58 19.02 8.30 69.96 0.58 19.60 16 6 O -0.53 -19.09 17.65 19.44 0.34 -18.75 16 7 O -0.50 -12.03 13.44 -56.71 -0.76 -12.79 16 8 C -0.09 -3.39 10.57 22.40 0.24 -3.16 16 9 C -0.21 -7.98 5.72 -20.07 -0.11 -8.10 16 10 C 0.21 7.98 5.75 85.63 0.49 8.47 16 11 N -0.61 -28.91 2.91 -731.30 -2.13 -31.04 16 12 C 0.17 7.92 7.38 127.77 0.94 8.86 16 13 C -0.26 -13.89 9.67 84.03 0.81 -13.08 16 14 H 0.07 3.68 7.85 -2.91 -0.02 3.66 16 15 C -0.05 -2.85 5.12 84.86 0.43 -2.41 16 16 N -0.93 -54.75 10.60 21.65 0.23 -54.52 16 17 Si 0.96 45.56 29.57 68.60 2.03 47.59 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.09 2.76 4.40 -2.39 -0.01 2.74 16 24 H 0.44 5.28 9.11 -74.06 -0.67 4.61 16 25 H 0.16 5.86 8.06 -2.91 -0.02 5.84 16 26 H 0.06 2.24 8.03 -2.39 -0.02 2.22 16 27 H 0.08 2.63 7.85 -2.39 -0.02 2.61 16 28 H 0.01 0.32 6.98 -2.39 -0.02 0.30 16 29 H 0.02 0.90 7.13 -2.38 -0.02 0.88 16 30 H 0.04 1.54 7.01 -2.39 -0.02 1.53 16 31 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -69.72 274.38 4.62 -65.10 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 0.49 Total: 4.11 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 4.47 Total: 6.29 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.90 Total: -85.56 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.47 Total: -37.53 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.72 4.62 -65.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738957131.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.906 kcal (2) G-P(sol) polarization free energy of solvation -69.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds