Wall clock time and date at job start Sun Mar 29 2020 21:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37095 * 120.00270 * 2 1 4 4 H 1.08001 * 119.99972 * 204.39972 * 3 2 1 5 5 C 1.38946 * 119.99980 * 24.39310 * 3 2 1 6 6 N 1.31411 * 119.99979 * 12.65838 * 5 3 2 7 7 Si 1.86805 * 120.00156 * 192.65659 * 5 3 2 8 8 H 1.48497 * 109.47135 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.46987 * 120.00268 * 7 5 3 10 10 H 1.48498 * 109.47174 * 239.99886 * 7 5 3 11 11 C 1.34779 * 119.99924 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99845 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00193 * 359.97438 * 11 2 1 14 14 C 1.50697 * 109.47433 * 180.02562 * 13 11 2 15 15 N 1.31791 * 119.09188 * 269.73685 * 14 13 11 16 16 C 1.32320 * 120.84260 * 179.71974 * 15 14 13 17 17 C 1.38815 * 119.07209 * 0.53798 * 16 15 14 18 18 F 1.35105 * 120.82815 * 179.71501 * 17 16 15 19 19 C 1.38821 * 118.34965 * 359.73306 * 17 16 15 20 20 N 1.31786 * 119.09323 * 90.00198 * 14 13 11 21 21 H 1.08998 * 109.46752 * 265.86166 * 1 2 3 22 22 H 1.08998 * 109.46718 * 25.86430 * 1 2 3 23 23 H 1.09003 * 109.46623 * 145.86163 * 1 2 3 24 24 H 0.97000 * 120.00363 * 179.97438 * 6 5 3 25 25 H 1.09003 * 109.46693 * 60.00095 * 13 11 2 26 26 H 1.09003 * 109.47091 * 300.00646 * 13 11 2 27 27 H 1.07999 * 120.45905 * 180.30123 * 16 15 14 28 28 H 1.08001 * 120.46213 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1582 1.2290 -0.3864 5 6 1.5489 2.3369 0.4970 6 7 0.4348 2.2491 1.1884 7 14 2.3237 4.0073 0.1823 8 1 3.5639 3.8352 -0.6160 9 1 1.3683 4.8629 -0.5664 10 1 2.6542 4.6518 1.4787 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3647 -3.6178 -0.0005 15 7 2.7770 -4.1083 -1.1522 16 6 3.6405 -5.1101 -1.1926 17 6 4.1027 -5.6508 -0.0005 18 9 4.9803 -6.6780 -0.0005 19 6 3.6404 -5.1101 1.1915 20 7 2.7810 -4.1049 1.1511 21 1 -0.3633 -0.0742 1.0250 22 1 -0.3633 0.9247 -0.4483 23 1 -0.3633 -0.8506 -0.5768 24 1 0.0150 3.0516 1.5357 25 1 0.7584 -2.5298 -0.8903 26 1 0.7590 -2.5302 0.8897 27 1 3.9780 -5.5041 -2.1399 28 1 3.9772 -5.5048 2.1388 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177401386.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:46 Heat of formation + Delta-G solvation = -42.490828 kcal Electronic energy + Delta-G solvation = -16375.995170 eV Core-core repulsion = 13341.523539 eV Total energy + Delta-G solvation = -3034.471631 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.10413 -42.14356 -40.21694 -36.70361 -34.98118 -34.11877 -33.45008 -30.02566 -28.02935 -26.32874 -26.03570 -24.18715 -20.97829 -19.44605 -18.90959 -18.66106 -18.06239 -17.60191 -17.08585 -16.58999 -16.16546 -15.86187 -15.42924 -15.09944 -14.48650 -14.24850 -14.00520 -13.84313 -13.33702 -13.11591 -12.94598 -12.69431 -12.60845 -12.27222 -12.11697 -12.11325 -11.00815 -10.60926 -10.35955 -10.17892 -9.67479 -8.34699 -5.99885 -0.42869 -0.10329 1.35992 1.41416 1.55078 1.99180 2.22509 2.42713 2.72389 2.77263 3.02273 3.10453 3.20606 3.62694 3.63919 3.98508 4.21391 4.35939 4.52598 4.64346 4.75743 5.06726 5.24029 5.40461 5.44866 5.77852 6.09508 6.46974 6.88739 7.15046 7.43743 7.99164 8.68538 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.051737 B = 0.005376 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.072361 B = 5207.013598 C = 5406.936899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.459 5.459 3 C -0.345 4.345 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.893 5.893 7 Si 0.989 3.011 8 H -0.276 1.276 9 H -0.263 1.263 10 H -0.276 1.276 11 C 0.450 3.550 12 O -0.634 6.634 13 C -0.059 4.059 14 C 0.330 3.670 15 N -0.505 5.505 16 C 0.126 3.874 17 C -0.010 4.010 18 F -0.114 7.114 19 C 0.125 3.875 20 N -0.509 5.509 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.274 0.726 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.213 0.787 28 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 -13.250 -2.355 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.177 5.177 3 C -0.473 4.473 4 H 0.086 0.914 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.812 3.188 8 H -0.201 1.201 9 H -0.187 1.187 10 H -0.201 1.201 11 C 0.238 3.762 12 O -0.522 6.522 13 C -0.100 4.100 14 C 0.063 3.937 15 N -0.219 5.219 16 C -0.041 4.041 17 C -0.034 4.034 18 F -0.093 7.093 19 C -0.042 4.042 20 N -0.222 5.222 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.152 0.848 26 H 0.145 0.855 27 H 0.230 0.770 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.506 -12.370 -2.262 12.585 hybrid contribution 1.170 0.114 0.094 1.179 sum 0.664 -12.256 -2.167 12.464 Atomic orbital electron populations 1.21547 0.78902 1.01287 1.01008 1.43780 1.06992 1.04276 1.62649 1.19600 1.00406 0.86040 1.41221 0.91436 1.26067 0.97042 1.02841 0.94260 1.70055 1.19557 1.30795 1.32718 0.84955 0.78337 0.77296 0.78193 1.20068 1.18726 1.20147 1.20459 0.87662 0.85638 0.82408 1.90487 1.16241 1.87977 1.57502 1.20350 0.95699 0.86684 1.07254 1.22573 0.93560 0.93799 0.83745 1.68261 1.12646 1.10702 1.30248 1.23995 0.90603 0.89999 0.99516 1.19456 0.95391 0.91250 0.97316 1.91556 1.65525 1.54957 1.97235 1.23977 0.90713 0.89983 0.99570 1.68259 1.12674 1.10727 1.30548 0.93424 0.92177 0.90851 0.91572 0.84841 0.85543 0.77004 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.95 8.45 127.77 1.08 6.03 15 2 N -0.46 -23.89 3.01 -658.89 -1.98 -25.88 15 3 C -0.34 -19.91 9.24 84.04 0.78 -19.13 15 4 H 0.07 4.21 7.45 -2.91 -0.02 4.19 15 5 C 0.00 0.00 5.04 84.93 0.43 0.43 15 6 N -0.89 -47.17 10.83 21.66 0.23 -46.93 15 7 Si 0.99 42.76 29.57 68.60 2.03 44.79 15 8 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 9 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 10 H -0.28 -11.65 7.11 99.48 0.71 -10.95 15 11 C 0.45 22.57 7.62 87.66 0.67 23.24 15 12 O -0.63 -37.32 15.75 -3.07 -0.05 -37.37 15 13 C -0.06 -2.16 4.74 29.10 0.14 -2.03 15 14 C 0.33 12.06 6.13 138.75 0.85 12.91 15 15 N -0.51 -16.93 10.33 -187.69 -1.94 -18.87 15 16 C 0.13 3.22 11.30 84.76 0.96 4.18 15 17 C -0.01 -0.25 7.39 22.55 0.17 -0.08 15 18 F -0.11 -2.39 17.30 44.97 0.78 -1.61 15 19 C 0.12 3.27 11.30 84.76 0.96 4.23 15 20 N -0.51 -17.56 10.33 -187.69 -1.94 -19.50 15 21 H 0.05 2.08 7.83 -2.39 -0.02 2.06 15 22 H 0.06 2.75 6.80 -2.39 -0.02 2.73 15 23 H 0.07 2.42 6.61 -2.39 -0.02 2.41 15 24 H 0.27 13.49 8.31 -92.71 -0.77 12.72 15 25 H 0.13 4.11 7.41 -2.39 -0.02 4.10 15 26 H 0.13 4.16 8.11 -2.39 -0.02 4.15 15 27 H 0.21 3.59 8.06 -2.91 -0.02 3.56 15 28 H 0.21 3.77 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -72.56 258.28 4.35 -68.21 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.19 Total: 7.38 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 6.02 Total: 29.77 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -5.63 Total: -111.17 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.05 Total: -37.37 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -72.56 4.35 -68.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177401386.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.720 kcal (2) G-P(sol) polarization free energy of solvation -72.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds