Wall clock time and date at job start Sun Mar 29 2020 22:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35861 * 117.00092 * 2 1 4 4 N 1.30800 * 126.05688 * 0.03839 * 3 2 1 5 5 N 1.39909 * 108.89607 * 179.97438 * 4 3 2 6 6 C 1.46497 * 125.68882 * 179.97438 * 5 4 3 7 7 C 1.34193 * 108.63188 * 359.72565 * 5 4 3 8 8 C 1.38194 * 107.49183 * 0.43267 * 7 5 4 9 9 C 1.47183 * 126.45704 * 179.83592 * 8 7 5 10 10 O 1.21637 * 120.00211 * 173.62449 * 9 8 7 11 11 N 1.34780 * 119.99607 * 353.62454 * 9 8 7 12 12 C 1.46499 * 120.00084 * 4.25579 * 11 9 8 13 13 C 1.36990 * 119.99755 * 184.25403 * 11 9 8 14 14 H 1.08000 * 120.00309 * 25.18548 * 13 11 9 15 15 C 1.38972 * 120.00122 * 205.17534 * 13 11 9 16 16 N 1.31418 * 119.99526 * 20.26213 * 15 13 11 17 17 Si 1.86795 * 120.00455 * 200.25953 * 15 13 11 18 18 H 1.48507 * 109.46870 * 60.00208 * 17 15 13 19 19 H 1.48496 * 109.47495 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47127 * 300.00891 * 17 15 13 21 21 H 1.09006 * 109.47053 * 300.00702 * 1 2 3 22 22 H 1.09008 * 109.46719 * 60.00405 * 1 2 3 23 23 H 1.08992 * 109.47744 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47552 * 89.97243 * 6 5 4 25 25 H 1.09000 * 109.47783 * 209.97858 * 6 5 4 26 26 H 1.09006 * 109.46957 * 329.97966 * 6 5 4 27 27 H 1.07996 * 126.25972 * 180.26541 * 7 5 4 28 28 H 1.09004 * 109.47157 * 60.49808 * 12 11 9 29 29 H 1.08997 * 109.47112 * 180.49425 * 12 11 9 30 30 H 1.09002 * 109.47367 * 300.49875 * 12 11 9 31 31 H 0.97006 * 119.99803 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 7 1.4532 2.3766 0.0007 5 7 2.4279 3.3802 0.0010 6 6 2.1697 4.8223 0.0013 7 6 3.6388 2.8019 0.0066 8 6 3.4456 1.4335 -0.0001 9 6 4.4955 0.4020 -0.0008 10 8 4.1952 -0.7715 0.1099 11 7 5.7896 0.7578 -0.1241 12 6 6.1591 2.1749 -0.1637 13 6 6.7594 -0.2056 -0.2125 14 1 6.5119 -1.1884 -0.5856 15 6 8.0619 0.0816 0.1779 16 7 8.2987 1.0939 0.9817 17 14 9.4758 -0.9712 -0.4398 18 1 9.5249 -0.9134 -1.9230 19 1 10.7537 -0.4608 0.1184 20 1 9.2728 -2.3767 -0.0058 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0275 0.0005 24 1 2.1051 5.1797 1.0289 25 1 2.9819 5.3370 -0.5120 26 1 1.2298 5.0232 -0.5130 27 1 4.5904 3.3124 0.0122 28 1 5.8474 2.6577 0.7626 29 1 7.2396 2.2657 -0.2749 30 1 5.6652 2.6558 -1.0081 31 1 9.2078 1.2942 1.2545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147020708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:47 Heat of formation + Delta-G solvation = 14.527313 kcal Electronic energy + Delta-G solvation = -17244.390522 eV Core-core repulsion = 14335.851689 eV Total energy + Delta-G solvation = -2908.538834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.44071 -39.85255 -39.26033 -36.60615 -33.92244 -33.58830 -31.40046 -28.79138 -28.17059 -27.40626 -26.20573 -23.19834 -21.98404 -21.03670 -19.03908 -18.17708 -17.69240 -17.27955 -16.98629 -16.32712 -16.02166 -15.90928 -15.70544 -15.50001 -14.52258 -14.15316 -13.72382 -13.46974 -13.33912 -13.25189 -12.99669 -12.81176 -12.47319 -12.25832 -12.08172 -12.07932 -11.74803 -10.88871 -10.40204 -10.09946 -9.59991 -9.36924 -8.33600 -5.92138 0.61117 1.21477 1.37723 1.45516 1.49436 1.56413 2.28701 2.41030 2.58272 3.18889 3.20518 3.52593 3.90172 4.30118 4.34065 4.36441 4.49135 4.53574 4.57468 4.60083 4.70870 4.77386 4.82332 4.88106 5.37855 5.50941 5.95374 6.18913 6.25247 6.54127 6.66699 7.22446 7.49908 8.14073 8.70010 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.032710 B = 0.007288 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.812908 B = 3841.165086 C = 4597.509880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.285 3.715 4 N -0.363 5.363 5 N -0.346 5.346 6 C 0.089 3.911 7 C 0.114 3.886 8 C -0.311 4.311 9 C 0.509 3.491 10 O -0.635 6.635 11 N -0.455 5.455 12 C 0.082 3.918 13 C -0.344 4.344 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.887 5.887 17 Si 0.988 3.012 18 H -0.265 1.265 19 H -0.266 1.266 20 H -0.281 1.281 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.120 0.880 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.101 0.899 27 H 0.237 0.763 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.386 12.230 -2.623 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.206 6.206 3 C 0.081 3.919 4 N -0.204 5.204 5 N -0.129 5.129 6 C -0.049 4.049 7 C -0.038 4.038 8 C -0.326 4.326 9 C 0.301 3.699 10 O -0.523 6.523 11 N -0.173 5.173 12 C -0.060 4.060 13 C -0.471 4.471 14 H 0.083 0.917 15 C -0.201 4.201 16 N -0.525 5.525 17 Si 0.811 3.189 18 H -0.190 1.190 19 H -0.190 1.190 20 H -0.207 1.207 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.138 0.862 24 H 0.113 0.887 25 H 0.144 0.856 26 H 0.119 0.881 27 H 0.253 0.747 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.424 12.183 -2.480 15.601 hybrid contribution 1.055 -1.182 0.017 1.584 sum -8.369 11.001 -2.463 14.040 Atomic orbital electron populations 1.23232 0.76090 1.05098 1.02318 1.86485 1.23819 1.21677 1.88601 1.20616 0.90460 0.85527 0.95301 1.77036 1.14418 0.94391 1.34555 1.48198 1.02368 1.07547 1.54797 1.22479 1.06223 0.70627 1.05542 1.24634 0.92677 0.91304 0.95171 1.19986 0.91592 0.94276 1.26761 1.17735 0.83015 0.87554 0.81631 1.90548 1.82917 1.21222 1.57654 1.43558 1.04034 1.07159 1.62592 1.22216 1.04135 0.80658 0.99003 1.19535 0.88979 0.95640 1.42990 0.91666 1.26023 1.00468 0.99025 0.94585 1.70020 1.22545 1.30473 1.29502 0.85090 0.76821 0.77929 0.79025 1.19000 1.19042 1.20664 0.92072 0.91851 0.86206 0.88699 0.85563 0.88075 0.74725 0.92338 0.89102 0.91549 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.70 113.37 1.21 2.01 16 2 O -0.30 -13.27 10.00 -87.34 -0.87 -14.14 16 3 C 0.29 12.36 7.85 85.71 0.67 13.03 16 4 N -0.36 -12.85 11.90 -169.97 -2.02 -14.88 16 5 N -0.35 -9.69 3.98 -367.71 -1.46 -11.15 16 6 C 0.09 1.21 11.44 127.77 1.46 2.67 16 7 C 0.11 3.74 9.43 84.32 0.80 4.53 16 8 C -0.31 -14.18 6.07 -20.07 -0.12 -14.30 16 9 C 0.51 28.89 7.61 86.59 0.66 29.55 16 10 O -0.64 -41.86 16.20 0.49 0.01 -41.85 16 11 N -0.46 -24.89 3.00 -662.88 -1.99 -26.87 16 12 C 0.08 3.46 7.54 127.77 0.96 4.42 16 13 C -0.34 -20.36 9.17 84.06 0.77 -19.59 16 14 H 0.07 4.18 7.55 -2.91 -0.02 4.16 16 15 C 0.00 0.06 4.87 84.93 0.41 0.47 16 16 N -0.89 -46.58 11.02 21.67 0.24 -46.34 16 17 Si 0.99 42.51 29.60 68.60 2.03 44.54 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 22 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 25 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 1.16 8.14 -2.38 -0.02 1.15 16 27 H 0.24 6.10 4.11 -2.91 -0.01 6.08 16 28 H 0.06 2.24 6.58 -2.38 -0.02 2.22 16 29 H 0.09 4.11 5.50 -2.39 -0.01 4.10 16 30 H 0.07 2.24 6.41 -2.39 -0.02 2.22 16 31 H 0.28 13.42 8.31 -92.70 -0.77 12.65 16 Total: -1.00 -83.19 268.97 3.91 -79.27 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.16 Total: 8.63 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 6.83 Total: 22.80 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -5.23 Total: -99.24 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -0.87 Total: -56.00 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -83.19 3.91 -79.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147020708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.800 kcal (2) G-P(sol) polarization free energy of solvation -83.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds