Wall clock time and date at job start Sun Mar 29 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47179 * 2 1 4 4 C 1.46907 * 111.00036 * 298.16852 * 3 2 1 5 5 C 1.50696 * 109.46894 * 293.04912 * 4 3 2 6 6 H 1.08001 * 120.00723 * 354.95897 * 5 4 3 7 7 C 1.37884 * 119.99877 * 174.96442 * 5 4 3 8 8 N 1.31514 * 119.99763 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00202 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47009 * 89.99872 * 9 7 5 11 11 H 1.48494 * 109.47338 * 210.00005 * 9 7 5 12 12 H 1.48504 * 109.46972 * 329.99914 * 9 7 5 13 13 C 1.46898 * 111.00164 * 62.12337 * 3 2 1 14 14 C 1.50706 * 109.46890 * 66.04667 * 13 3 2 15 15 N 1.31786 * 119.08898 * 269.73160 * 14 13 3 16 16 C 1.32316 * 120.84317 * 179.72152 * 15 14 13 17 17 C 1.38822 * 119.07180 * 0.53981 * 16 15 14 18 18 F 1.35102 * 120.82792 * 179.71073 * 17 16 15 19 19 C 1.38823 * 118.34764 * 359.73732 * 17 16 15 20 20 N 1.31779 * 119.09088 * 90.00182 * 14 13 3 21 21 H 1.09000 * 109.46788 * 299.81498 * 1 2 3 22 22 H 1.09004 * 109.46984 * 59.81102 * 1 2 3 23 23 H 1.08995 * 109.47230 * 179.80922 * 1 2 3 24 24 H 1.09006 * 109.46861 * 239.99772 * 2 1 3 25 25 H 1.08999 * 109.47155 * 120.00260 * 2 1 3 26 26 H 1.09002 * 109.46682 * 53.04706 * 4 3 2 27 27 H 1.08999 * 109.46972 * 173.04808 * 4 3 2 28 28 H 0.97001 * 119.99850 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47063 * 306.04769 * 13 3 2 30 30 H 1.09001 * 109.46767 * 186.04345 * 13 3 2 31 31 H 1.08002 * 120.46649 * 180.29712 * 16 15 14 32 32 H 1.08003 * 120.46430 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5848 2.0971 -1.2091 5 6 2.2609 1.4982 -2.4153 6 1 3.0058 0.7264 -2.2894 7 6 1.9285 1.9356 -3.6800 8 7 1.0211 2.8750 -3.8335 9 14 2.7670 1.1937 -5.1753 10 1 1.9898 0.0195 -5.6469 11 1 2.8372 2.2080 -6.2576 12 1 4.1407 0.7638 -4.8100 13 6 1.5906 2.0951 1.2123 14 6 2.2555 1.4797 2.4167 15 7 1.6521 0.4919 3.0467 16 6 2.2069 -0.0773 4.1045 17 6 3.4352 0.3877 4.5542 18 9 4.0310 -0.1636 5.6342 19 6 4.0359 1.4336 3.8669 20 7 3.4215 1.9479 2.8139 21 1 -0.3633 0.5110 0.8917 22 1 -0.3633 0.5168 -0.8883 23 1 -0.3633 -1.0276 -0.0034 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.5038 2.0056 -1.3155 27 1 1.8540 3.1502 -1.1271 28 1 0.7875 3.1830 -4.7232 29 1 0.5084 2.0170 1.3152 30 1 1.8739 3.1450 1.1377 31 1 1.7093 -0.8896 4.6134 32 1 4.9913 1.8223 4.1874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235006428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:28 Heat of formation + Delta-G solvation = 13.778148 kcal Electronic energy + Delta-G solvation = -16753.320276 eV Core-core repulsion = 13857.121745 eV Total energy + Delta-G solvation = -2896.198530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.113 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.17802 -41.02792 -37.20347 -33.89986 -32.79097 -31.84099 -29.44147 -27.71096 -25.24169 -24.99219 -23.33535 -22.40867 -19.51600 -18.34170 -17.69844 -16.64745 -16.24276 -16.04684 -15.19052 -15.04072 -14.52745 -14.16735 -13.65305 -13.53045 -13.29266 -12.80941 -12.31404 -11.82914 -11.55099 -11.43111 -11.15046 -11.00997 -10.89628 -10.69404 -10.51897 -10.02636 -9.79734 -9.33636 -9.24321 -9.17094 -8.42588 -7.25610 -6.02097 -4.02760 0.63762 0.88830 3.32749 3.39095 3.43382 3.54928 3.71064 3.93305 4.04606 4.44599 4.51225 4.59370 5.09572 5.33439 5.38715 5.41309 5.81655 5.90176 5.99500 6.10319 6.22819 6.29426 6.54024 6.70964 6.82158 6.95354 7.27060 7.41791 7.79257 7.99761 8.07723 8.15768 8.51234 9.04501 9.61033 11.08582 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.041911 B = 0.005323 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.923298 B = 5259.150583 C = 5403.807234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.062 3.938 3 N -0.527 5.527 4 C 0.190 3.810 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.112 3.888 14 C 0.338 3.662 15 N -0.487 5.487 16 C 0.125 3.875 17 C -0.024 4.024 18 F -0.126 7.126 19 C 0.127 3.873 20 N -0.475 5.475 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.008 0.992 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.176 0.824 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -4.460 15.461 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.067 4.067 3 N -0.252 5.252 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.018 4.018 14 C 0.071 3.929 15 N -0.200 5.200 16 C -0.044 4.044 17 C -0.049 4.049 18 F -0.105 7.105 19 C -0.042 4.042 20 N -0.187 5.187 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.065 0.935 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.193 0.807 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.779 -3.941 14.524 15.154 hybrid contribution 0.127 -0.910 0.178 0.936 sum 1.906 -4.851 14.703 15.599 Atomic orbital electron populations 1.22318 0.98851 1.01093 1.01999 1.21970 0.92698 0.90916 1.01079 1.62385 1.59248 1.02193 1.01337 1.19829 0.94993 0.93761 0.84827 1.21106 1.22002 1.21248 0.89911 0.91962 1.24958 0.95293 0.95239 0.98997 1.69951 1.31991 1.29045 1.22831 0.86514 0.79968 0.78734 0.82308 1.20777 1.21273 1.19822 1.20891 0.96632 0.98212 0.86081 1.23547 0.87087 0.87851 0.94414 1.68428 1.35435 1.09393 1.06748 1.23430 0.90684 0.97928 0.92325 1.19585 0.96406 0.99279 0.89611 1.91523 1.83063 1.84324 1.51587 1.23504 0.99842 0.90864 0.89951 1.68402 1.09371 1.29202 1.11772 0.93100 0.91438 0.93511 0.90171 0.93237 0.97447 0.95346 0.92936 0.92120 0.88550 0.80725 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 9.26 37.16 0.34 -3.03 16 2 C 0.06 1.23 5.64 -3.82 -0.02 1.21 16 3 N -0.53 -11.36 4.69 -237.51 -1.11 -12.47 16 4 C 0.19 4.82 4.52 -4.97 -0.02 4.80 16 5 C -0.50 -13.97 8.40 -34.44 -0.29 -14.26 16 6 H 0.06 1.74 7.37 -52.49 -0.39 1.35 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.11 2.05 5.19 -4.97 -0.03 2.02 16 14 C 0.34 5.61 6.41 -157.21 -1.01 4.60 16 15 N -0.49 -7.29 9.20 -10.68 -0.10 -7.39 16 16 C 0.12 1.48 11.30 -17.13 -0.19 1.28 16 17 C -0.02 -0.28 7.39 -39.15 -0.29 -0.57 16 18 F -0.13 -1.35 17.30 2.25 0.04 -1.31 16 19 C 0.13 1.56 11.30 -17.12 -0.19 1.37 16 20 N -0.47 -7.54 10.33 -10.67 -0.11 -7.65 16 21 H 0.05 0.88 6.33 -51.93 -0.33 0.55 16 22 H 0.07 1.40 6.29 -51.93 -0.33 1.07 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 1.73 6.98 -51.93 -0.36 1.37 16 25 H 0.05 0.93 6.44 -51.93 -0.33 0.59 16 26 H 0.01 0.21 6.01 -51.93 -0.31 -0.11 16 27 H 0.03 0.77 7.91 -51.93 -0.41 0.35 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.06 1.07 6.07 -51.93 -0.32 0.76 16 30 H 0.10 1.75 7.92 -51.93 -0.41 1.34 16 31 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.18 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -30.06 274.42 -6.82 -36.88 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.59 Total: -2.12 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.80 Total: -1.10 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.59 Total: -53.04 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.06 -6.82 -36.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235006428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.658 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds