Wall clock time and date at job start Sun Mar 29 2020 22:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.29019 * 126.43997 * 2 1 4 4 N 1.28738 * 108.80937 * 180.02562 * 3 2 1 5 5 N 1.28838 * 109.39735 * 359.97438 * 4 3 2 6 6 C 1.31071 * 107.99475 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.66421 * 180.26637 * 6 5 4 8 8 N 1.46500 * 109.46890 * 269.68639 * 7 6 5 9 9 C 1.34780 * 119.99886 * 179.97438 * 8 7 6 10 10 O 1.21272 * 119.99805 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99769 * 180.02562 * 9 8 7 12 12 C 1.53011 * 109.46901 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46901 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00383 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99421 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00276 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99716 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47125 * 59.99399 * 17 15 13 19 19 H 1.48492 * 109.47292 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47056 * 300.00071 * 17 15 13 21 21 H 1.09001 * 109.47350 * 269.97210 * 1 2 3 22 22 H 1.09000 * 109.47078 * 29.98058 * 1 2 3 23 23 H 1.09005 * 109.47021 * 149.97386 * 1 2 3 24 24 H 1.08997 * 109.46659 * 29.68067 * 7 6 5 25 25 H 1.08992 * 109.47400 * 149.68576 * 7 6 5 26 26 H 0.97001 * 120.00674 * 359.97438 * 8 7 6 27 27 H 1.09001 * 109.47384 * 299.99400 * 11 9 8 28 28 H 1.08997 * 109.47345 * 60.00374 * 11 9 8 29 29 H 1.09001 * 109.46698 * 299.99926 * 12 11 9 30 30 H 1.09001 * 109.46638 * 59.99620 * 12 11 9 31 31 H 0.97002 * 119.99930 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0379 0.0000 4 7 3.4582 0.6480 -0.0005 5 7 3.4980 -0.6398 -0.0004 6 6 2.2644 -1.0829 0.0009 7 6 1.8263 -2.5248 0.0072 8 7 1.6780 -2.9960 -1.3720 9 6 1.2921 -4.2648 -1.6128 10 8 1.0681 -5.0163 -0.6878 11 6 1.1401 -4.7497 -3.0315 12 6 0.6963 -6.2140 -3.0252 13 6 0.5437 -6.6987 -4.4439 14 1 0.7428 -6.0294 -5.2677 15 6 0.1488 -7.9966 -4.6901 16 7 -0.0942 -8.8116 -3.6870 17 14 -0.0411 -8.5974 -6.4487 18 1 1.2592 -8.4776 -7.1558 19 1 -0.4717 -10.0185 -6.4426 20 1 -1.0613 -7.7735 -7.1458 21 1 -0.3634 -0.0005 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5143 24 1 2.5746 -3.1296 0.5193 25 1 0.8716 -2.6122 0.5256 26 1 1.8575 -2.3951 -2.1120 27 1 0.3917 -4.1452 -3.5440 28 1 2.0949 -4.6621 -3.5497 29 1 1.4450 -6.8183 -2.5129 30 1 -0.2585 -6.3020 -2.5067 31 1 -0.3716 -9.7248 -3.8603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324257595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:28 Heat of formation + Delta-G solvation = 72.749537 kcal Electronic energy + Delta-G solvation = -16218.344097 eV Core-core repulsion = 13344.622720 eV Total energy + Delta-G solvation = -2873.721377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.112 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.51730 -39.38457 -36.12985 -35.24739 -33.53489 -32.60690 -31.06732 -29.07503 -27.62855 -25.41116 -23.78982 -22.48127 -21.59084 -19.96403 -17.86560 -17.64730 -17.10319 -16.17492 -15.73578 -15.48518 -14.48348 -14.45440 -14.42957 -14.16208 -13.46549 -13.25382 -12.79567 -12.46731 -12.22673 -12.11087 -11.46295 -11.26072 -11.23129 -10.95208 -10.68679 -10.59499 -10.04115 -9.77383 -9.32820 -9.17079 -9.13778 -8.36902 -6.01055 -4.05866 0.78897 1.59986 1.86762 3.01407 3.24039 3.31485 3.36807 3.38399 3.60443 3.81279 4.36803 4.43460 4.44528 4.77029 4.94173 5.12092 5.22296 5.34165 5.36022 5.51486 5.74151 6.09731 6.13035 6.28188 6.76999 7.55283 7.67924 7.77891 8.00323 8.26890 8.30660 8.52593 9.01923 9.58152 11.09768 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.052796 B = 0.003961 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.210948 B = 7066.600451 C = 7142.498410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.300 5.300 3 N -0.092 5.092 4 N -0.075 5.075 5 N -0.284 5.284 6 C 0.170 3.830 7 C 0.204 3.796 8 N -0.744 5.744 9 C 0.516 3.484 10 O -0.526 6.526 11 C -0.128 4.128 12 C 0.037 3.963 13 C -0.530 4.530 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.101 0.899 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.401 0.599 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 17.081 6.488 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.103 5.103 3 N -0.078 5.078 4 N -0.069 5.069 5 N -0.135 5.135 6 C -0.108 4.108 7 C 0.077 3.923 8 N -0.401 5.401 9 C 0.305 3.695 10 O -0.400 6.400 11 C -0.168 4.168 12 C -0.001 4.001 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.120 0.880 22 H 0.129 0.871 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.112 0.888 26 H 0.235 0.765 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.085 17.340 7.231 18.787 hybrid contribution -0.847 -0.526 -1.242 1.592 sum -0.932 16.814 5.989 17.874 Atomic orbital electron populations 1.22529 0.71014 1.07114 1.06072 1.48508 1.10985 1.04209 1.46557 1.78906 0.98031 1.12674 1.18168 1.78677 1.09601 1.03710 1.14936 1.75098 1.17505 1.03474 1.17385 1.26140 0.86863 0.94244 1.03570 1.19570 1.03115 0.82528 0.87106 1.46263 1.73009 1.14483 1.06328 1.21676 0.74557 0.79574 0.93684 1.90700 1.48555 1.54267 1.46500 1.21903 1.02821 1.02642 0.89473 1.18919 0.97587 0.86620 0.96942 1.21164 1.46703 0.96822 0.92136 0.92627 1.25011 0.95357 0.96881 0.97011 1.69976 1.45954 1.06241 1.30599 0.86648 0.78520 0.77786 0.84954 1.20208 1.21253 1.20254 0.88025 0.87146 0.87135 0.87285 0.88817 0.76524 0.90051 0.89867 0.95668 0.95754 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.09 59.85 0.66 0.96 16 2 N -0.30 -2.70 3.75 -65.02 -0.24 -2.94 16 3 N -0.09 -1.09 13.29 60.35 0.80 -0.29 16 4 N -0.08 -1.06 13.43 60.35 0.81 -0.25 16 5 N -0.28 -3.87 12.36 32.70 0.40 -3.47 16 6 C 0.17 1.81 7.50 -155.43 -1.17 0.64 16 7 C 0.20 2.10 5.81 -5.19 -0.03 2.07 16 8 N -0.74 -8.85 5.55 -61.48 -0.34 -9.19 16 9 C 0.52 8.71 7.83 -10.98 -0.09 8.63 16 10 O -0.53 -11.04 15.98 5.56 0.09 -10.95 16 11 C -0.13 -2.38 5.64 -27.88 -0.16 -2.54 16 12 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 13 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 14 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.11 0.34 7.76 -51.93 -0.40 -0.06 16 24 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.09 0.80 7.83 -51.93 -0.41 0.40 16 26 H 0.40 4.01 8.46 -40.82 -0.35 3.66 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 282.21 15.07 4.25 4.25 Total: -1.00 -35.23 282.21 -3.47 -38.69 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -3.65 Total: -3.34 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.31 Total: -2.69 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 2.17 Total: -42.11 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.23 -3.47 -38.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324257595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.443 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds