Wall clock time and date at job start Sun Mar 29 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99837 * 2 1 4 4 H 1.48502 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47048 * 300.00493 * 3 2 1 6 6 H 1.48500 * 109.47194 * 60.00796 * 3 2 1 7 7 C 1.37877 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00135 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47367 * 174.96363 * 9 7 2 11 11 C 1.46900 * 110.99881 * 292.95571 * 10 9 7 12 12 C 1.53009 * 109.46861 * 298.09400 * 11 10 9 13 13 C 1.52998 * 109.46846 * 179.60242 * 12 11 10 14 14 O 1.42899 * 109.46934 * 179.97438 * 13 12 11 15 15 C 1.46902 * 111.00075 * 168.99838 * 10 9 7 16 16 C 1.50699 * 109.46889 * 189.99892 * 15 10 9 17 17 C 1.34519 * 125.78742 * 90.00345 * 16 15 10 18 18 C 1.41374 * 106.84019 * 179.97438 * 17 16 15 19 19 C 1.34510 * 106.84380 * 359.97438 * 18 17 16 20 20 O 1.34296 * 125.79136 * 269.69146 * 16 15 10 21 21 H 0.96994 * 119.99916 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47214 * 54.96504 * 9 7 2 23 23 H 1.08998 * 109.47403 * 294.96589 * 9 7 2 24 24 H 1.08995 * 109.47647 * 58.09406 * 11 10 9 25 25 H 1.08999 * 109.47147 * 178.09501 * 11 10 9 26 26 H 1.09001 * 109.47110 * 299.59782 * 12 11 10 27 27 H 1.08991 * 109.47032 * 59.59746 * 12 11 10 28 28 H 1.08993 * 109.47130 * 299.99805 * 13 12 11 29 29 H 1.09003 * 109.47384 * 59.99970 * 13 12 11 30 30 H 0.96698 * 113.99992 * 180.02562 * 14 13 12 31 31 H 1.08996 * 109.47204 * 69.99954 * 15 10 9 32 32 H 1.09000 * 109.46891 * 310.00247 * 15 10 9 33 33 H 1.08000 * 126.58063 * 0.03204 * 17 16 15 34 34 H 1.07999 * 126.57984 * 179.97438 * 18 17 16 35 35 H 1.08003 * 125.79397 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2010 -3.6130 -0.1227 11 6 2.8509 -3.6086 -1.4402 12 6 1.7940 -3.7948 -2.5308 13 6 2.4696 -3.7802 -3.9034 14 8 1.4826 -3.9547 -4.9220 15 6 1.5397 -4.8995 0.1338 16 6 2.5788 -5.9855 0.2428 17 6 3.1934 -6.3753 1.3741 18 6 4.0846 -7.4138 1.0190 19 6 3.9609 -7.5969 -0.3078 20 8 3.0440 -6.7322 -0.7719 21 1 -0.4850 0.8400 0.0004 22 1 0.5581 -2.5187 -0.8418 23 1 0.6941 -2.5972 0.9313 24 1 3.3633 -2.6583 -1.5894 25 1 3.5735 -4.4230 -1.4916 26 1 1.2864 -4.7485 -2.3858 27 1 1.0674 -2.9843 -2.4747 28 1 2.9772 -2.8266 -4.0484 29 1 3.1962 -4.5908 -3.9594 30 1 1.8405 -3.9561 -5.8203 31 1 0.8596 -5.1284 -0.6867 32 1 0.9775 -4.8395 1.0657 33 1 3.0356 -5.9730 2.3638 34 1 4.7391 -7.9561 1.6853 35 1 4.5039 -8.3194 -0.8991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078666763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:31 Heat of formation + Delta-G solvation = -33.590053 kcal Electronic energy + Delta-G solvation = -17310.736329 eV Core-core repulsion = 14503.651313 eV Total energy + Delta-G solvation = -2807.085016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.24649 -37.73172 -36.26181 -32.80129 -32.63770 -31.31658 -29.84351 -26.94680 -25.53986 -23.67640 -22.02810 -21.41349 -20.47219 -19.33614 -17.23316 -16.76265 -16.16100 -15.94959 -15.28773 -14.97492 -14.63170 -14.21340 -13.79283 -13.09088 -12.73047 -12.53999 -12.48287 -12.25632 -12.01129 -11.72122 -11.17199 -11.11150 -10.72744 -10.64095 -10.58076 -10.18740 -9.92070 -9.63903 -9.55980 -9.25827 -8.45965 -8.17305 -7.29626 -6.04212 -4.05520 2.03292 2.92279 3.30288 3.31021 3.38004 3.42743 4.41846 4.52125 4.97098 5.08429 5.29792 5.31349 5.32115 5.40428 5.55451 5.76579 5.84689 5.94058 6.00738 6.08190 6.13772 6.27430 6.33408 6.43692 6.65101 6.80369 6.87903 7.20417 7.37002 7.47381 7.76737 7.84366 8.01503 8.11779 8.47719 9.02317 9.58722 11.06466 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.007338 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.774176 B = 3814.867758 C = 4739.411480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.186 3.814 10 N -0.526 5.526 11 C 0.070 3.930 12 C -0.158 4.158 13 C 0.083 3.917 14 O -0.576 6.576 15 C 0.122 3.878 16 C 0.016 3.984 17 C -0.206 4.206 18 C -0.213 4.213 19 C -0.059 4.059 20 O -0.178 6.178 21 H 0.261 0.739 22 H 0.008 0.992 23 H 0.028 0.972 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.371 0.629 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 -12.056 -3.600 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.062 3.938 10 N -0.249 5.249 11 C -0.059 4.059 12 C -0.197 4.197 13 C 0.005 3.995 14 O -0.381 6.381 15 C -0.006 4.006 16 C -0.034 4.034 17 C -0.226 4.226 18 C -0.232 4.232 19 C -0.126 4.126 20 O -0.074 6.074 21 H 0.071 0.929 22 H 0.026 0.974 23 H 0.046 0.954 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.001 -11.843 -2.986 13.608 hybrid contribution 0.375 0.724 -0.840 1.171 sum 6.377 -11.118 -3.826 13.376 Atomic orbital electron populations 1.69961 1.06022 1.26719 1.50985 1.24973 0.94849 0.99267 0.95436 0.86462 0.80093 0.83493 0.77520 1.19665 1.21119 1.21007 1.21142 0.93555 0.89680 1.50049 0.91784 1.19866 0.90208 0.87031 0.96700 1.62472 1.33379 1.01237 1.27829 1.21935 0.95496 1.01949 0.86494 1.22202 1.01289 1.02980 0.93179 1.22131 0.90176 0.98916 0.88267 1.86527 1.37272 1.96513 1.17751 1.20643 0.90839 0.86658 1.02439 1.22635 1.00089 0.95368 0.85329 1.21533 1.00809 1.00637 0.99647 1.21773 1.03834 1.01950 0.95665 1.23868 0.96037 0.97632 0.95103 1.84042 1.45683 1.40229 1.37440 0.92939 0.97442 0.95370 0.89735 0.92701 0.92154 0.89712 0.93593 0.94346 0.78311 0.93482 0.88303 0.83639 0.84010 0.78803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -13.91 8.40 -34.44 -0.29 -14.20 16 8 H 0.06 1.76 7.37 -52.49 -0.39 1.38 16 9 C 0.19 4.70 4.53 -4.98 -0.02 4.68 16 10 N -0.53 -11.20 4.69 -237.51 -1.11 -12.31 16 11 C 0.07 1.37 4.99 -3.82 -0.02 1.35 16 12 C -0.16 -2.98 4.93 -26.73 -0.13 -3.11 16 13 C 0.08 1.32 7.05 37.16 0.26 1.59 16 14 O -0.58 -9.07 13.66 -35.23 -0.48 -9.55 16 15 C 0.12 2.24 5.29 -4.98 -0.03 2.21 16 16 C 0.02 0.28 5.88 -35.62 -0.21 0.07 16 17 C -0.21 -3.23 10.81 -39.70 -0.43 -3.66 16 18 C -0.21 -2.86 10.91 -39.71 -0.43 -3.29 16 19 C -0.06 -0.76 12.09 29.41 0.36 -0.41 16 20 O -0.18 -2.87 10.00 5.71 0.06 -2.82 16 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 22 H 0.01 0.21 6.01 -51.93 -0.31 -0.10 16 23 H 0.03 0.75 7.91 -51.93 -0.41 0.34 16 24 H 0.08 1.77 6.98 -51.93 -0.36 1.41 16 25 H 0.05 1.01 6.71 -51.93 -0.35 0.66 16 26 H 0.06 1.14 6.34 -51.93 -0.33 0.81 16 27 H 0.08 1.88 6.28 -51.93 -0.33 1.55 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.37 3.77 9.12 45.56 0.42 4.18 16 31 H 0.05 0.86 6.07 -51.93 -0.32 0.54 16 32 H 0.10 1.72 7.92 -51.93 -0.41 1.31 16 33 H 0.15 2.14 8.06 -52.49 -0.42 1.71 16 34 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.20 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 292.30 15.07 4.40 4.40 Total: -1.00 -31.48 292.30 -6.49 -37.97 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.04 Total: 4.74 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.04 Total: -13.30 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.38 Total: -37.91 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.42 Total: -12.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.48 -6.49 -37.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.381 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds