Wall clock time and date at job start Sun Mar 29 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99837 * 2 1 4 4 H 1.48502 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47048 * 300.00493 * 3 2 1 6 6 H 1.48500 * 109.47194 * 60.00796 * 3 2 1 7 7 C 1.37877 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00135 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47367 * 174.96363 * 9 7 2 11 11 C 1.46900 * 110.99881 * 292.95571 * 10 9 7 12 12 C 1.53009 * 109.46861 * 298.09400 * 11 10 9 13 13 C 1.52998 * 109.46846 * 179.60242 * 12 11 10 14 14 O 1.42899 * 109.46934 * 179.97438 * 13 12 11 15 15 C 1.46902 * 111.00075 * 168.99838 * 10 9 7 16 16 C 1.50699 * 109.46889 * 189.99892 * 15 10 9 17 17 C 1.34519 * 125.78742 * 90.00345 * 16 15 10 18 18 C 1.41374 * 106.84019 * 179.97438 * 17 16 15 19 19 C 1.34510 * 106.84380 * 359.97438 * 18 17 16 20 20 O 1.34296 * 125.79136 * 269.69146 * 16 15 10 21 21 H 0.96994 * 119.99916 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47214 * 54.96504 * 9 7 2 23 23 H 1.08998 * 109.47403 * 294.96589 * 9 7 2 24 24 H 1.08995 * 109.47647 * 58.09406 * 11 10 9 25 25 H 1.08999 * 109.47147 * 178.09501 * 11 10 9 26 26 H 1.09001 * 109.47110 * 299.59782 * 12 11 10 27 27 H 1.08991 * 109.47032 * 59.59746 * 12 11 10 28 28 H 1.08993 * 109.47130 * 299.99805 * 13 12 11 29 29 H 1.09003 * 109.47384 * 59.99970 * 13 12 11 30 30 H 0.96698 * 113.99992 * 180.02562 * 14 13 12 31 31 H 1.08996 * 109.47204 * 69.99954 * 15 10 9 32 32 H 1.09000 * 109.46891 * 310.00247 * 15 10 9 33 33 H 1.08000 * 126.58063 * 0.03204 * 17 16 15 34 34 H 1.07999 * 126.57984 * 179.97438 * 18 17 16 35 35 H 1.08003 * 125.79397 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2010 -3.6130 -0.1227 11 6 2.8509 -3.6086 -1.4402 12 6 1.7940 -3.7948 -2.5308 13 6 2.4696 -3.7802 -3.9034 14 8 1.4826 -3.9547 -4.9220 15 6 1.5397 -4.8995 0.1338 16 6 2.5788 -5.9855 0.2428 17 6 3.1934 -6.3753 1.3741 18 6 4.0846 -7.4138 1.0190 19 6 3.9609 -7.5969 -0.3078 20 8 3.0440 -6.7322 -0.7719 21 1 -0.4850 0.8400 0.0004 22 1 0.5581 -2.5187 -0.8418 23 1 0.6941 -2.5972 0.9313 24 1 3.3633 -2.6583 -1.5894 25 1 3.5735 -4.4230 -1.4916 26 1 1.2864 -4.7485 -2.3858 27 1 1.0674 -2.9843 -2.4747 28 1 2.9772 -2.8266 -4.0484 29 1 3.1962 -4.5908 -3.9594 30 1 1.8405 -3.9561 -5.8203 31 1 0.8596 -5.1284 -0.6867 32 1 0.9775 -4.8395 1.0657 33 1 3.0356 -5.9730 2.3638 34 1 4.7391 -7.9561 1.6853 35 1 4.5039 -8.3194 -0.8991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078666763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:31 Heat of formation + Delta-G solvation = -57.322518 kcal Electronic energy + Delta-G solvation = -17311.765446 eV Core-core repulsion = 14503.651313 eV Total energy + Delta-G solvation = -2808.114133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.40239 -39.31858 -37.59892 -34.80637 -33.89936 -32.70671 -31.38948 -28.75181 -26.96418 -25.46587 -23.61864 -22.53758 -21.88963 -20.78829 -18.64339 -18.09499 -17.91336 -17.36522 -16.80234 -16.51166 -16.32065 -15.52235 -15.44960 -14.56446 -14.31855 -14.01485 -13.70575 -13.64315 -13.41952 -13.27299 -13.03789 -12.66379 -12.60039 -12.43724 -12.16845 -11.88433 -11.66513 -11.31498 -10.88596 -10.74333 -10.59823 -9.37539 -9.02289 -8.18952 -6.28375 0.87425 1.41128 1.41959 1.55127 1.80125 2.17167 2.41676 3.14084 3.27994 3.45585 3.81564 3.96123 4.19594 4.23076 4.23863 4.41792 4.45156 4.48698 4.59349 4.72269 4.78493 4.97459 4.99570 5.13522 5.18421 5.27009 5.32211 5.41054 5.66433 5.71005 6.03625 6.22134 6.34609 6.53447 6.86994 6.91340 7.40804 8.91930 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.007338 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.774176 B = 3814.867758 C = 4739.411480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.202 3.798 10 N -0.533 5.533 11 C 0.079 3.921 12 C -0.149 4.149 13 C 0.089 3.911 14 O -0.596 6.596 15 C 0.127 3.873 16 C -0.014 4.014 17 C -0.208 4.208 18 C -0.222 4.222 19 C -0.045 4.045 20 O -0.193 6.193 21 H 0.264 0.736 22 H -0.017 1.017 23 H 0.005 0.995 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.397 0.603 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.460 -13.140 -4.182 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.077 3.923 10 N -0.256 5.256 11 C -0.050 4.050 12 C -0.188 4.188 13 C 0.011 3.989 14 O -0.405 6.405 15 C -0.001 4.001 16 C -0.064 4.064 17 C -0.228 4.228 18 C -0.241 4.241 19 C -0.111 4.111 20 O -0.089 6.089 21 H 0.073 0.927 22 H 0.001 0.999 23 H 0.023 0.977 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.246 0.754 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.166 0.834 34 H 0.189 0.811 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.184 -12.945 -3.585 15.729 hybrid contribution -0.277 0.926 -0.669 1.175 sum 7.908 -12.019 -4.254 15.003 Atomic orbital electron populations 1.70085 1.07651 1.27761 1.51920 1.25851 0.95673 1.02984 0.94921 0.85387 0.79051 0.78860 0.77662 1.18712 1.20556 1.20446 1.21421 0.93547 0.90873 1.49807 0.92019 1.19487 0.90166 0.88251 0.94414 1.62355 1.32512 1.01606 1.29177 1.21842 0.95607 1.01644 0.85892 1.22036 1.00286 1.01038 0.95421 1.22013 0.90024 1.00274 0.86593 1.86460 1.38011 1.96540 1.19446 1.20513 0.91490 0.85890 1.02196 1.22215 1.01483 0.96455 0.86275 1.21806 1.00668 1.00946 0.99393 1.22118 1.03927 1.01579 0.96499 1.24809 0.94163 0.96536 0.95633 1.84018 1.46608 1.40832 1.37488 0.92747 0.99915 0.97672 0.91371 0.90847 0.92391 0.93857 0.93145 0.91611 0.75374 0.93925 0.88337 0.83427 0.81143 0.74415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.52 -29.23 8.40 25.60 0.21 -29.02 16 8 H 0.06 3.44 7.37 -2.91 -0.02 3.42 16 9 C 0.20 10.71 4.53 85.55 0.39 11.10 16 10 N -0.53 -23.37 4.69 -905.35 -4.24 -27.61 16 11 C 0.08 3.10 4.99 86.31 0.43 3.53 16 12 C -0.15 -5.72 4.93 30.60 0.15 -5.57 16 13 C 0.09 2.72 7.05 71.98 0.51 3.23 16 14 O -0.60 -17.96 13.66 -148.98 -2.03 -20.00 16 15 C 0.13 4.77 5.29 85.56 0.45 5.22 16 16 C -0.01 -0.47 5.88 24.83 0.15 -0.33 16 17 C -0.21 -6.24 10.81 22.19 0.24 -6.00 16 18 C -0.22 -5.27 10.91 22.19 0.24 -5.03 16 19 C -0.04 -1.00 12.09 66.97 0.81 -0.19 16 20 O -0.19 -5.83 10.00 -2.48 -0.02 -5.86 16 21 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 22 H -0.02 -0.96 6.01 -2.38 -0.01 -0.98 16 23 H 0.01 0.29 7.91 -2.39 -0.02 0.28 16 24 H 0.07 2.89 6.98 -2.39 -0.02 2.87 16 25 H 0.07 2.63 6.71 -2.39 -0.02 2.61 16 26 H 0.06 2.22 6.34 -2.39 -0.02 2.21 16 27 H 0.04 2.02 6.28 -2.39 -0.02 2.00 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.40 7.19 9.12 -74.06 -0.68 6.52 16 31 H 0.04 1.62 6.07 -2.39 -0.01 1.61 16 32 H 0.10 3.60 7.92 -2.39 -0.02 3.58 16 33 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.24 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -68.98 292.30 0.47 -68.51 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.41 Total: 16.90 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.04 Total: -22.38 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -3.96 Total: -83.56 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -2.06 Total: -25.86 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.98 0.47 -68.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.186 kcal (2) G-P(sol) polarization free energy of solvation -68.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds