Wall clock time and date at job start Sun Mar 29 2020 23:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47293 * 2 1 4 4 N 1.46508 * 109.47008 * 119.99765 * 2 1 3 5 5 C 1.36805 * 120.00192 * 245.43646 * 4 2 1 6 6 H 1.08007 * 119.99670 * 43.04987 * 5 4 2 7 7 C 1.39073 * 120.00426 * 223.05250 * 5 4 2 8 8 N 1.31354 * 119.99779 * 13.85586 * 7 5 4 9 9 Si 1.86796 * 120.00056 * 193.86404 * 7 5 4 10 10 H 1.48501 * 109.47521 * 89.99465 * 9 7 5 11 11 H 1.48501 * 109.47030 * 209.99633 * 9 7 5 12 12 H 1.48500 * 109.47193 * 329.99163 * 9 7 5 13 13 C 1.34775 * 119.99793 * 65.43927 * 4 2 1 14 14 O 1.21649 * 120.00103 * 185.03996 * 13 4 2 15 15 C 1.47333 * 120.00004 * 5.04225 * 13 4 2 16 16 C 1.32567 * 118.48860 * 185.22756 * 15 13 4 17 17 C 1.50463 * 122.26749 * 180.38236 * 16 15 13 18 18 C 1.53226 * 109.45373 * 342.45487 * 17 16 15 19 19 C 1.53472 * 108.28525 * 47.15824 * 18 17 16 20 20 O 1.35482 * 118.49253 * 5.20576 * 15 13 4 21 21 H 1.09008 * 109.46980 * 302.79601 * 1 2 3 22 22 H 1.08998 * 109.47303 * 62.79512 * 1 2 3 23 23 H 1.09006 * 109.47299 * 182.79780 * 1 2 3 24 24 H 1.08998 * 109.47182 * 239.99709 * 2 1 3 25 25 H 1.09000 * 109.46895 * 182.45223 * 3 2 1 26 26 H 1.09001 * 109.47129 * 302.45311 * 3 2 1 27 27 H 1.09004 * 109.47253 * 62.45276 * 3 2 1 28 28 H 0.96993 * 119.99807 * 180.02562 * 8 7 5 29 29 H 1.07998 * 118.86200 * 0.39975 * 16 15 13 30 30 H 1.08999 * 109.47107 * 222.46259 * 17 16 15 31 31 H 1.08999 * 109.47233 * 102.45347 * 17 16 15 32 32 H 1.08994 * 109.70684 * 166.86880 * 18 17 16 33 33 H 1.08996 * 109.70797 * 287.45416 * 18 17 16 34 34 H 1.09001 * 109.68994 * 56.73098 * 19 18 17 35 35 H 1.09002 * 109.69546 * 177.31194 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.7106 0.0022 2.1514 6 1 2.3730 0.9807 2.4598 7 6 3.8491 -0.5533 2.7252 8 7 4.4169 -1.6022 2.1748 9 14 4.5708 0.1919 4.2786 10 1 3.9588 -0.4534 5.4678 11 1 6.0393 -0.0278 4.2970 12 1 4.2880 1.6495 4.3059 13 6 1.7854 -2.0085 1.3558 14 8 2.1095 -2.5627 2.3890 15 6 1.1384 -2.7779 0.2787 16 6 0.8283 -4.0465 0.5063 17 6 0.1738 -4.9128 -0.5354 18 6 -0.4375 -4.0264 -1.6256 19 6 0.6059 -2.9780 -2.0350 20 8 0.8874 -2.1563 -0.8986 21 1 -0.3633 0.5567 0.8639 22 1 -0.3634 0.4698 -0.9140 23 1 -0.3634 -1.0265 0.0502 24 1 1.8933 -0.5139 -0.8899 25 1 3.1291 1.4427 -0.0440 26 1 1.6412 1.9689 -0.8672 27 1 1.7130 1.9435 0.9112 28 1 5.2107 -1.9899 2.5752 29 1 1.0529 -4.4728 1.4728 30 1 -0.6105 -5.5102 -0.0706 31 1 0.9189 -5.5731 -0.9792 32 1 -0.7040 -4.6364 -2.4887 33 1 -1.3265 -3.5284 -1.2388 34 1 1.5183 -3.4764 -2.3625 35 1 0.2114 -2.3638 -2.8446 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098019260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:13 Heat of formation + Delta-G solvation = -41.730876 kcal Electronic energy + Delta-G solvation = -18426.845878 eV Core-core repulsion = 15619.407849 eV Total energy + Delta-G solvation = -2807.438028 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90364 -37.78126 -35.27489 -33.41156 -32.38809 -30.71287 -29.75685 -26.83273 -25.44625 -24.57616 -23.18310 -20.79546 -19.87621 -18.23101 -17.16897 -15.93860 -15.79315 -15.05393 -14.64665 -13.97076 -13.87747 -13.74825 -13.54810 -13.03405 -12.57465 -12.43882 -11.91044 -11.72987 -11.54656 -11.46620 -11.06796 -10.80684 -10.68387 -10.61345 -10.37849 -10.26329 -10.20274 -10.10722 -9.62150 -8.72326 -8.15510 -7.70230 -6.99011 -6.06752 -3.79892 2.50043 3.33935 3.40127 3.42641 3.84801 4.34509 4.83254 4.92873 5.01428 5.14196 5.24061 5.41418 5.59282 5.73965 5.77849 5.86943 5.92170 6.00978 6.09592 6.28188 6.30126 6.36407 6.39817 6.59892 6.60570 6.80501 6.84287 7.04420 7.18779 7.26524 7.65640 8.03060 8.35771 9.10493 9.25937 9.69789 10.36539 11.01360 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.009461 C = 0.007813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.307584 B = 2958.657660 C = 3582.765937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 C -0.135 4.135 4 N -0.434 5.434 5 C -0.334 4.334 6 H 0.083 0.917 7 C 0.062 3.938 8 N -0.830 5.830 9 Si 0.913 3.087 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.514 3.486 14 O -0.528 6.528 15 C 0.068 3.932 16 C -0.248 4.248 17 C -0.075 4.075 18 C -0.158 4.158 19 C 0.047 3.953 20 O -0.298 6.298 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.264 0.736 29 H 0.130 0.870 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 -0.997 -8.867 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 C -0.193 4.193 4 N -0.155 5.155 5 C -0.461 4.461 6 H 0.100 0.900 7 C -0.149 4.149 8 N -0.464 5.464 9 Si 0.741 3.259 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.302 3.698 14 O -0.408 6.408 15 C 0.020 3.980 16 C -0.270 4.270 17 C -0.112 4.112 18 C -0.195 4.195 19 C -0.028 4.028 20 O -0.213 6.213 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.057 -1.150 -8.364 11.004 hybrid contribution 0.421 -0.104 0.550 0.700 sum -6.637 -1.254 -7.814 10.329 Atomic orbital electron populations 1.22343 0.96924 1.02037 0.99881 1.21139 0.92883 0.93171 0.90101 1.21840 1.01777 0.95515 1.00149 1.43278 1.48228 1.06730 1.17236 1.19013 1.06379 1.02989 1.17758 0.89987 1.25307 0.95336 0.95881 0.98330 1.69830 1.18287 1.20859 1.37414 0.86183 0.77672 0.78945 0.83145 1.20386 1.21279 1.19765 1.17369 0.83039 0.83408 0.86019 1.90631 1.53253 1.69025 1.27901 1.21204 0.97140 0.93622 0.86060 1.22705 1.07293 0.94928 1.02076 1.20315 0.99157 0.97054 0.94715 1.22196 0.99221 0.98623 0.99484 1.22924 0.97860 0.93562 0.88492 1.86517 1.84813 1.33949 1.15986 0.93890 0.93471 0.91533 0.90810 0.92068 0.94009 0.92457 0.92552 0.85266 0.91061 0.91515 0.90930 0.90916 0.92486 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.42 37.15 0.31 -2.51 16 2 C 0.13 2.78 2.85 -67.93 -0.19 2.58 16 3 C -0.14 -2.59 8.20 37.16 0.30 -2.29 16 4 N -0.43 -11.39 2.64 -108.98 -0.29 -11.68 16 5 C -0.33 -9.31 7.83 -15.02 -0.12 -9.43 16 6 H 0.08 2.18 6.63 -52.48 -0.35 1.84 16 7 C 0.06 1.76 4.53 -17.45 -0.08 1.68 16 8 N -0.83 -25.17 11.46 55.50 0.64 -24.53 16 9 Si 0.91 22.12 29.58 -169.99 -5.03 17.09 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.51 14.01 6.47 -12.56 -0.08 13.93 16 14 O -0.53 -16.36 13.82 5.23 0.07 -16.29 16 15 C 0.07 1.50 5.48 -37.79 -0.21 1.29 16 16 C -0.25 -4.99 9.54 -36.33 -0.35 -5.33 16 17 C -0.08 -1.11 6.23 -27.88 -0.17 -1.28 16 18 C -0.16 -2.00 6.22 -26.37 -0.16 -2.16 16 19 C 0.05 0.66 7.08 37.40 0.26 0.93 16 20 O -0.30 -5.60 4.19 -18.14 -0.08 -5.67 16 21 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.27 5.15 -51.93 -0.27 1.01 16 24 H 0.07 1.58 6.13 -51.93 -0.32 1.26 16 25 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.11 6.86 -51.93 -0.36 0.76 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.13 2.85 7.30 -52.49 -0.38 2.47 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 277.50 15.07 4.18 4.18 Total: -1.00 -33.00 277.50 -6.01 -39.01 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.03 Total: 0.47 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.48 Total: -2.58 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.35 Total: -36.21 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.00 Total: -21.97 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.00 -6.01 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098019260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.720 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds