Wall clock time and date at job start Sun Mar 29 2020 22:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99958 * 2 1 4 4 C 1.53004 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47046 * 64.99978 * 4 3 2 6 6 C 1.36937 * 119.99721 * 264.42688 * 5 4 3 7 7 H 1.08002 * 120.00055 * 146.16534 * 6 5 4 8 8 C 1.38811 * 120.00315 * 326.15607 * 6 5 4 9 9 N 1.31617 * 120.00182 * 337.64646 * 8 6 5 10 10 Si 1.86798 * 119.99973 * 157.64506 * 8 6 5 11 11 H 1.48504 * 109.47380 * 60.00292 * 10 8 6 12 12 H 1.48496 * 109.47372 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47266 * 300.00394 * 10 8 6 14 14 C 1.46500 * 120.00333 * 84.43128 * 5 4 3 15 15 C 1.50695 * 109.47412 * 89.99539 * 14 5 4 16 16 C 1.34516 * 125.79087 * 89.99827 * 15 14 5 17 17 C 1.41382 * 106.84149 * 180.02562 * 16 15 14 18 18 C 1.34515 * 106.84254 * 0.02562 * 17 16 15 19 19 C 1.50698 * 125.78756 * 179.73534 * 18 17 16 20 20 O 1.34304 * 108.41899 * 359.97438 * 18 17 16 21 21 H 1.09006 * 109.47126 * 59.99770 * 1 2 3 22 22 H 1.08999 * 109.46861 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46824 * 300.00118 * 1 2 3 24 24 H 1.08998 * 109.47335 * 60.00274 * 3 2 1 25 25 H 1.09001 * 109.47586 * 299.99748 * 3 2 1 26 26 H 1.09006 * 109.46818 * 304.99619 * 4 3 2 27 27 H 1.09003 * 109.46999 * 184.99970 * 4 3 2 28 28 H 0.96998 * 120.00178 * 179.97438 * 9 8 6 29 29 H 1.09000 * 109.46857 * 329.99770 * 14 5 4 30 30 H 1.09001 * 109.47390 * 210.00028 * 14 5 4 31 31 H 1.08001 * 126.57947 * 0.05316 * 16 15 14 32 32 H 1.08001 * 126.57714 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.46940 * 90.00304 * 19 18 17 34 34 H 1.09007 * 109.47062 * 210.00113 * 19 18 17 35 35 H 1.08999 * 109.47619 * 330.00106 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2067 -0.7843 -1.3044 7 1 3.9951 -1.3341 -2.2096 8 6 4.7130 -1.4449 -0.1935 9 7 5.3733 -0.7743 0.7266 10 14 4.4572 -3.2856 -0.0045 11 1 5.0759 -3.9921 -1.1548 12 1 5.0892 -3.7461 1.2579 13 1 3.0025 -3.5818 0.0340 14 6 4.1688 1.3871 -2.4494 15 6 5.5898 1.8872 -2.4914 16 6 6.6272 1.2610 -3.0754 17 6 7.7638 2.0777 -2.8756 18 6 7.3532 3.1539 -2.1809 19 6 8.2250 4.2980 -1.7315 20 8 6.0354 3.0332 -1.9512 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8465 -0.8900 26 1 3.8514 0.5683 0.8410 27 1 3.9785 2.1766 0.0889 28 1 5.7268 -1.2359 1.5031 29 1 3.4857 2.2360 -2.4209 30 1 3.9678 0.7888 -3.3381 31 1 6.5974 0.3159 -3.5973 32 1 8.7689 1.8761 -3.2155 33 1 8.2407 5.0676 -2.5032 34 1 7.8263 4.7176 -0.8078 35 1 9.2386 3.9363 -1.5585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125352282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:18 Heat of formation + Delta-G solvation = -9.751945 kcal Electronic energy + Delta-G solvation = -17562.140940 eV Core-core repulsion = 14756.089623 eV Total energy + Delta-G solvation = -2806.051318 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62798 -37.23017 -35.38488 -32.34992 -31.94083 -30.90464 -29.12382 -27.06087 -25.66193 -24.20631 -22.76513 -21.02482 -20.29116 -19.23736 -16.81062 -15.89632 -15.64518 -15.32438 -15.01707 -14.56606 -13.99903 -13.70565 -13.45511 -13.29591 -12.79415 -12.54420 -12.30970 -11.95108 -11.75517 -11.47694 -11.15215 -11.01655 -10.80466 -10.74059 -10.61949 -10.11127 -10.01383 -9.71870 -8.99443 -8.84634 -8.42454 -7.42088 -6.65604 -5.74501 -3.25855 2.57496 3.44633 3.48782 3.50048 3.58089 3.78037 4.57000 4.67857 5.35502 5.40977 5.52185 5.64632 5.73514 5.75315 5.79979 5.81407 5.90798 6.03428 6.06792 6.13412 6.24520 6.26934 6.43980 6.61965 6.70799 6.78694 6.86493 7.03539 7.44010 7.67895 7.84867 8.05161 8.10429 8.53479 9.18305 9.82391 10.35291 11.28330 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.021346 B = 0.008650 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.409023 B = 3236.090314 C = 4030.916995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.047 3.953 4 C 0.141 3.859 5 N -0.559 5.559 6 C -0.247 4.247 7 H 0.063 0.937 8 C 0.018 3.982 9 N -0.887 5.887 10 Si 0.901 3.099 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.212 3.788 15 C 0.005 3.995 16 C -0.217 4.217 17 C -0.207 4.207 18 C -0.051 4.051 19 C -0.063 4.063 20 O -0.180 6.180 21 H 0.029 0.971 22 H 0.074 0.926 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.110 0.890 27 H 0.041 0.959 28 H 0.254 0.746 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 7.133 -3.588 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.032 4.032 4 C 0.014 3.986 5 N -0.277 5.277 6 C -0.376 4.376 7 H 0.081 0.919 8 C -0.182 4.182 9 N -0.529 5.529 10 Si 0.731 3.269 11 H -0.210 1.210 12 H -0.219 1.219 13 H -0.206 1.206 14 C 0.084 3.916 15 C -0.049 4.049 16 C -0.237 4.237 17 C -0.226 4.226 18 C -0.101 4.101 19 C -0.120 4.120 20 O -0.077 6.077 21 H 0.048 0.952 22 H 0.093 0.907 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.127 0.873 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.770 7.098 -3.252 8.005 hybrid contribution -0.006 -0.922 0.178 0.939 sum -1.776 6.175 -3.074 7.123 Atomic orbital electron populations 1.22636 0.84138 1.01512 0.98460 1.88206 1.16665 1.27736 1.94849 1.23373 0.98595 0.84108 0.97091 1.21101 0.87421 0.97229 0.92824 1.44015 1.73546 1.03997 1.06135 1.18924 1.36742 0.82046 0.99894 0.91907 1.25045 0.96275 0.97932 0.98942 1.69983 1.35064 1.35608 1.12227 0.86403 0.78237 0.85419 0.76861 1.20987 1.21868 1.20588 1.19823 0.84975 0.93656 0.93160 1.24594 1.00382 0.84184 0.95742 1.21335 0.92144 1.01847 1.08368 1.21398 0.99613 0.96036 1.05584 1.22115 0.83076 1.00097 1.04820 1.20111 0.96737 0.93808 1.01312 1.83949 1.22755 1.38413 1.62563 0.95239 0.90693 0.95495 0.95405 0.95327 0.87263 0.94103 0.93566 0.93147 0.90266 0.84558 0.84945 0.91230 0.91249 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.85 10.44 -35.23 -0.37 -8.22 16 3 C 0.05 0.96 6.28 37.16 0.23 1.20 16 4 C 0.14 3.37 5.63 -4.04 -0.02 3.34 16 5 N -0.56 -13.94 2.39 -174.61 -0.42 -14.36 16 6 C -0.25 -6.75 9.28 -15.06 -0.14 -6.89 16 7 H 0.06 1.71 7.92 -52.49 -0.42 1.29 16 8 C 0.02 0.51 4.91 -17.43 -0.09 0.43 16 9 N -0.89 -26.02 11.34 55.49 0.63 -25.39 16 10 Si 0.90 22.34 29.61 -169.99 -5.03 17.30 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.21 4.55 6.22 -5.20 -0.03 4.52 16 15 C 0.00 0.11 6.90 -35.63 -0.25 -0.14 16 16 C -0.22 -4.69 10.81 -39.70 -0.43 -5.12 16 17 C -0.21 -4.04 10.81 -39.70 -0.43 -4.47 16 18 C -0.05 -0.97 7.32 -35.63 -0.26 -1.24 16 19 C -0.06 -0.86 10.42 36.00 0.38 -0.48 16 20 O -0.18 -3.93 10.65 5.70 0.06 -3.87 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 26 H 0.11 3.00 5.35 -51.93 -0.28 2.72 16 27 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 30 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 31 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 32 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -31.69 302.35 -5.81 -37.49 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.31 Total: -0.26 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 0.08 Total: -7.25 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.21 Total: -39.76 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.31 Total: -12.09 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.69 -5.81 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125352282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.741 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds