Wall clock time and date at job start Sun Mar 29 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00119 * 2 1 4 4 C 1.52995 * 109.47421 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47112 * 184.99952 * 4 3 2 6 6 N 1.46906 * 109.46946 * 64.99873 * 4 3 2 7 7 C 1.46901 * 110.99793 * 85.00144 * 6 4 3 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47432 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46890 * 120.00210 * 12 10 8 15 15 H 1.48501 * 109.47062 * 240.00257 * 12 10 8 16 16 C 1.50701 * 109.47458 * 305.00056 * 4 3 2 17 17 C 1.34514 * 125.78824 * 260.00354 * 16 4 3 18 18 C 1.41381 * 106.83952 * 179.97438 * 17 16 4 19 19 C 1.34514 * 106.84246 * 0.02562 * 18 17 16 20 20 C 1.50697 * 125.79024 * 180.02562 * 19 18 17 21 21 O 1.34301 * 125.79068 * 79.68640 * 16 4 3 22 22 H 1.08999 * 109.47302 * 299.99933 * 1 2 3 23 23 H 1.08999 * 109.47159 * 60.00320 * 1 2 3 24 24 H 1.09007 * 109.47254 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47028 * 59.99574 * 3 2 1 26 26 H 1.08994 * 109.46944 * 299.99976 * 3 2 1 27 27 H 1.00899 * 110.99995 * 321.04542 * 6 4 3 28 28 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 29 29 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 30 30 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 31 31 H 1.07996 * 126.58036 * 359.95999 * 17 16 4 32 32 H 1.08005 * 126.58116 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47021 * 89.99728 * 20 19 18 34 34 H 1.09004 * 109.47395 * 209.99468 * 20 19 18 35 35 H 1.09001 * 109.47186 * 329.99983 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9778 0.5623 -1.2543 7 6 4.1207 1.5656 -2.3178 8 6 4.5754 0.8915 -3.5866 9 1 4.7413 -0.1756 -3.6016 10 6 4.7787 1.6369 -4.7285 11 7 4.5763 2.9362 -4.7104 12 14 5.3417 0.8011 -6.3014 13 1 5.4956 -0.6560 -6.0600 14 1 4.3322 1.0219 -7.3679 15 1 6.6445 1.3731 -6.7269 16 6 3.9714 0.3329 1.1648 17 6 4.4492 0.7879 2.3371 18 6 4.7303 -0.3465 3.1327 19 6 4.4081 -1.4268 2.3989 20 6 4.5390 -2.8621 2.8390 21 8 3.9434 -1.0091 1.2101 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6885 1.8465 0.8900 26 1 1.6886 1.8463 -0.8899 27 1 3.3477 -0.1743 -1.5344 28 1 4.8580 2.3104 -2.0181 29 1 3.1608 2.0530 -2.4887 30 1 4.7197 3.4606 -5.5137 31 1 4.5910 1.8213 2.6167 32 1 5.1275 -0.3458 4.1371 33 1 3.6152 -3.1796 3.3226 34 1 4.7297 -3.4926 1.9705 35 1 5.3669 -2.9525 3.5423 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299075743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:05 Heat of formation + Delta-G solvation = -35.479164 kcal Electronic energy + Delta-G solvation = -17161.362220 eV Core-core repulsion = 14354.195287 eV Total energy + Delta-G solvation = -2807.166934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.10496 -38.01413 -35.40055 -32.81638 -32.72164 -31.44283 -29.28570 -26.76299 -25.85404 -25.21925 -22.43127 -21.30145 -21.02165 -19.54488 -16.97183 -16.17738 -15.93498 -15.81217 -15.38549 -14.96736 -14.61177 -14.11536 -13.54287 -13.11862 -12.87149 -12.76274 -12.66570 -12.34708 -12.14437 -11.80063 -11.59808 -11.38338 -11.27642 -11.03389 -10.75369 -10.62360 -9.95351 -9.46796 -9.43303 -9.21323 -8.50441 -7.84913 -7.35460 -6.04481 -4.05656 2.18353 2.99075 3.31685 3.37404 3.38904 3.45104 3.96797 4.43536 4.91339 5.12229 5.22651 5.28530 5.32116 5.40389 5.45855 5.48923 5.54518 5.58507 5.68117 5.74588 5.78657 5.85463 5.92297 6.18961 6.36156 6.55542 6.91387 7.14472 7.32972 7.37012 7.67849 7.78826 8.08815 8.37577 8.57174 9.03578 9.59242 11.06748 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.006063 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.472089 B = 4617.138170 C = 5043.388501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.032 3.968 4 C 0.164 3.836 5 H 0.114 0.886 6 N -0.677 5.677 7 C 0.192 3.808 8 C -0.511 4.511 9 H 0.064 0.936 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.045 3.955 17 C -0.233 4.233 18 C -0.214 4.214 19 C -0.032 4.032 20 C -0.068 4.068 21 O -0.148 6.148 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.345 0.655 28 H 0.030 0.970 29 H -0.011 1.011 30 H 0.261 0.739 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -5.567 14.108 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.047 4.047 4 C 0.052 3.948 5 H 0.132 0.868 6 N -0.308 5.308 7 C 0.066 3.934 8 C -0.550 4.550 9 H 0.082 0.918 10 C -0.145 4.145 11 N -0.539 5.539 12 Si 0.727 3.273 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.008 4.008 17 C -0.253 4.253 18 C -0.234 4.234 19 C -0.083 4.083 20 C -0.125 4.125 21 O -0.043 6.043 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.164 0.836 28 H 0.048 0.952 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.468 -5.762 13.899 15.696 hybrid contribution -0.758 0.406 -0.889 1.237 sum -5.227 -5.356 13.010 15.009 Atomic orbital electron populations 1.22690 0.81658 1.02373 0.99597 1.87934 1.19092 1.27328 1.95284 1.23370 0.95332 0.85304 1.00671 1.20260 0.90184 0.95542 0.88770 0.86824 1.60670 1.52777 1.14426 1.02907 1.19661 0.95400 0.90241 0.88123 1.21197 1.44882 0.94905 0.94015 0.91801 1.24973 0.95614 0.94844 0.99105 1.69964 1.49687 1.05351 1.28851 0.86415 0.78230 0.79773 0.82860 1.19607 1.21103 1.20974 1.22389 1.01305 0.80466 0.96596 1.21416 1.09340 0.99782 0.94780 1.21381 1.08946 0.91785 1.01243 1.22329 1.03855 0.96842 0.85256 1.20193 1.02581 0.88183 1.01538 1.84049 1.64307 1.22386 1.33510 0.94636 0.94113 0.89907 0.93398 0.91877 0.83623 0.95211 0.99343 0.92965 0.84108 0.84319 0.90768 0.90719 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.46 9.43 -35.23 -0.33 -6.79 16 3 C 0.03 0.53 5.60 37.16 0.21 0.74 16 4 C 0.16 3.07 2.87 -68.86 -0.20 2.87 16 5 H 0.11 2.03 7.79 -51.93 -0.40 1.63 16 6 N -0.68 -15.26 6.22 -109.21 -0.68 -15.94 16 7 C 0.19 5.01 5.24 -4.97 -0.03 4.98 16 8 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 9 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 12 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 C 0.04 0.82 5.72 -35.62 -0.20 0.61 16 17 C -0.23 -3.80 10.80 -39.70 -0.43 -4.23 16 18 C -0.21 -3.20 10.81 -39.70 -0.43 -3.63 16 19 C -0.03 -0.50 7.32 -35.63 -0.26 -0.76 16 20 C -0.07 -0.74 10.42 36.00 0.38 -0.37 16 21 O -0.15 -2.79 10.51 5.72 0.06 -2.73 16 22 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.06 1.09 7.35 -51.93 -0.38 0.71 16 27 H 0.35 7.89 7.93 -39.29 -0.31 7.57 16 28 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 29 H -0.01 -0.30 7.36 -51.93 -0.38 -0.68 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -31.92 302.59 -6.19 -38.11 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.25 Total: 3.60 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.27 Total: -11.70 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.06 Total: -41.92 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.27 Total: -9.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.92 -6.19 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299075743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.634 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds