Wall clock time and date at job start Sun Mar 29 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00119 * 2 1 4 4 C 1.52995 * 109.47421 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47112 * 184.99952 * 4 3 2 6 6 N 1.46906 * 109.46946 * 64.99873 * 4 3 2 7 7 C 1.46901 * 110.99793 * 85.00144 * 6 4 3 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47432 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46890 * 120.00210 * 12 10 8 15 15 H 1.48501 * 109.47062 * 240.00257 * 12 10 8 16 16 C 1.50701 * 109.47458 * 305.00056 * 4 3 2 17 17 C 1.34514 * 125.78824 * 260.00354 * 16 4 3 18 18 C 1.41381 * 106.83952 * 179.97438 * 17 16 4 19 19 C 1.34514 * 106.84246 * 0.02562 * 18 17 16 20 20 C 1.50697 * 125.79024 * 180.02562 * 19 18 17 21 21 O 1.34301 * 125.79068 * 79.68640 * 16 4 3 22 22 H 1.08999 * 109.47302 * 299.99933 * 1 2 3 23 23 H 1.08999 * 109.47159 * 60.00320 * 1 2 3 24 24 H 1.09007 * 109.47254 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47028 * 59.99574 * 3 2 1 26 26 H 1.08994 * 109.46944 * 299.99976 * 3 2 1 27 27 H 1.00899 * 110.99995 * 321.04542 * 6 4 3 28 28 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 29 29 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 30 30 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 31 31 H 1.07996 * 126.58036 * 359.95999 * 17 16 4 32 32 H 1.08005 * 126.58116 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47021 * 89.99728 * 20 19 18 34 34 H 1.09004 * 109.47395 * 209.99468 * 20 19 18 35 35 H 1.09001 * 109.47186 * 329.99983 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9778 0.5623 -1.2543 7 6 4.1207 1.5656 -2.3178 8 6 4.5754 0.8915 -3.5866 9 1 4.7413 -0.1756 -3.6016 10 6 4.7787 1.6369 -4.7285 11 7 4.5763 2.9362 -4.7104 12 14 5.3417 0.8011 -6.3014 13 1 5.4956 -0.6560 -6.0600 14 1 4.3322 1.0219 -7.3679 15 1 6.6445 1.3731 -6.7269 16 6 3.9714 0.3329 1.1648 17 6 4.4492 0.7879 2.3371 18 6 4.7303 -0.3465 3.1327 19 6 4.4081 -1.4268 2.3989 20 6 4.5390 -2.8621 2.8390 21 8 3.9434 -1.0091 1.2101 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6885 1.8465 0.8900 26 1 1.6886 1.8463 -0.8899 27 1 3.3477 -0.1743 -1.5344 28 1 4.8580 2.3104 -2.0181 29 1 3.1608 2.0530 -2.4887 30 1 4.7197 3.4606 -5.5137 31 1 4.5910 1.8213 2.6167 32 1 5.1275 -0.3458 4.1371 33 1 3.6152 -3.1796 3.3226 34 1 4.7297 -3.4926 1.9705 35 1 5.3669 -2.9525 3.5423 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299075743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:05 Heat of formation + Delta-G solvation = -57.667497 kcal Electronic energy + Delta-G solvation = -17162.324379 eV Core-core repulsion = 14354.195287 eV Total energy + Delta-G solvation = -2808.129092 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.36385 -39.36228 -37.02969 -34.82087 -33.93595 -32.80480 -30.79630 -28.13135 -27.49921 -26.43426 -24.23130 -22.73377 -22.46441 -20.82598 -18.82624 -17.70076 -17.23392 -17.20551 -16.76167 -16.53269 -16.29517 -15.43345 -15.18796 -14.46249 -14.30726 -13.90356 -13.81788 -13.67296 -13.55279 -13.22763 -13.16457 -12.94514 -12.70228 -12.58991 -12.38344 -12.24170 -12.01011 -11.33656 -10.74537 -10.66149 -10.63886 -9.24384 -9.02189 -8.23881 -6.34128 0.93081 1.40231 1.41028 1.55096 1.78240 2.18140 2.39546 2.74398 3.09527 3.51454 3.76789 3.93514 4.11889 4.24544 4.29550 4.37364 4.45566 4.51144 4.56256 4.67197 4.77387 4.78496 4.93465 4.97498 5.05574 5.17139 5.25726 5.37938 5.59256 5.78464 5.98029 6.13916 6.36730 6.47535 6.64368 6.84423 7.36159 8.87564 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.006063 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.472089 B = 4617.138170 C = 5043.388501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.041 3.959 4 C 0.161 3.839 5 H 0.114 0.886 6 N -0.681 5.681 7 C 0.210 3.790 8 C -0.537 4.537 9 H 0.058 0.942 10 C 0.006 3.994 11 N -0.930 5.930 12 Si 0.971 3.029 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.276 1.276 16 C 0.010 3.990 17 C -0.229 4.229 18 C -0.220 4.220 19 C -0.041 4.041 20 C -0.068 4.068 21 O -0.177 6.177 22 H 0.054 0.946 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.341 0.659 28 H 0.007 0.993 29 H -0.028 1.028 30 H 0.266 0.734 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 -6.582 15.117 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.037 4.037 4 C 0.051 3.949 5 H 0.132 0.868 6 N -0.311 5.311 7 C 0.083 3.917 8 C -0.575 4.575 9 H 0.076 0.924 10 C -0.193 4.193 11 N -0.570 5.570 12 Si 0.795 3.205 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.202 1.202 16 C -0.041 4.041 17 C -0.248 4.248 18 C -0.239 4.239 19 C -0.091 4.091 20 C -0.124 4.124 21 O -0.073 6.073 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.116 0.884 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.159 0.841 28 H 0.025 0.975 29 H -0.010 1.010 30 H 0.075 0.925 31 H 0.177 0.823 32 H 0.188 0.812 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.420 -6.776 14.934 16.984 hybrid contribution -0.802 0.697 -1.091 1.523 sum -5.222 -6.079 13.842 15.995 Atomic orbital electron populations 1.22907 0.79608 1.03776 1.00555 1.87899 1.21381 1.27401 1.95453 1.23190 0.93898 0.85509 1.01129 1.20289 0.91851 0.95641 0.87167 0.86789 1.60536 1.53582 1.13700 1.03289 1.19285 0.93588 0.90210 0.88664 1.21513 1.45629 0.94845 0.95496 0.92413 1.25871 0.95350 0.95474 1.02578 1.70069 1.50157 1.06727 1.30079 0.85313 0.78016 0.78728 0.78411 1.19144 1.20054 1.20187 1.22261 1.03982 0.80695 0.97152 1.21786 1.07600 1.01265 0.94177 1.21775 1.08784 0.90891 1.02460 1.23288 1.02479 0.99136 0.84186 1.20413 1.04600 0.85321 1.02066 1.84015 1.65251 1.22650 1.35363 0.92741 0.94028 0.88361 0.90820 0.93292 0.84098 0.97502 1.01045 0.92509 0.82254 0.81203 0.88937 0.90948 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.93 16 2 O -0.40 -13.73 9.43 -148.98 -1.41 -15.13 16 3 C 0.04 1.38 5.60 71.98 0.40 1.78 16 4 C 0.16 6.17 2.87 44.17 0.13 6.30 16 5 H 0.11 4.22 7.79 -2.39 -0.02 4.20 16 6 N -0.68 -31.77 6.22 -499.44 -3.10 -34.87 16 7 C 0.21 11.39 5.24 85.56 0.45 11.84 16 8 C -0.54 -31.46 9.32 25.60 0.24 -31.22 16 9 H 0.06 3.38 7.81 -2.91 -0.02 3.35 16 10 C 0.01 0.33 5.46 84.66 0.46 0.80 16 11 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 12 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 C 0.01 0.38 5.72 24.83 0.14 0.52 16 17 C -0.23 -7.13 10.80 22.19 0.24 -6.90 16 18 C -0.22 -6.07 10.81 22.19 0.24 -5.83 16 19 C -0.04 -1.20 7.32 24.83 0.18 -1.02 16 20 C -0.07 -1.30 10.42 71.24 0.74 -0.56 16 21 O -0.18 -6.63 10.51 -2.46 -0.03 -6.66 16 22 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.05 1.75 7.35 -2.39 -0.02 1.73 16 27 H 0.34 16.18 7.93 -89.69 -0.71 15.47 16 28 H 0.01 0.40 8.06 -2.39 -0.02 0.38 16 29 H -0.03 -1.59 7.36 -2.39 -0.02 -1.61 16 30 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.09 302.59 2.61 -66.48 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.36 Total: 21.20 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.47 Total: -22.35 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -2.82 Total: -90.57 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.43 Total: -21.79 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.09 2.61 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299075743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.812 kcal (2) G-P(sol) polarization free energy of solvation -69.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds