Wall clock time and date at job start Sun Mar 29 2020 22:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46835 * 2 1 4 4 H 1.09001 * 109.47073 * 55.00192 * 3 2 1 5 5 C 1.50701 * 109.46793 * 174.99859 * 3 2 1 6 6 H 1.08005 * 119.99858 * 120.00033 * 5 3 2 7 7 C 1.37877 * 120.00055 * 300.00219 * 5 3 2 8 8 N 1.31517 * 119.99839 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00064 * 359.97438 * 7 5 3 10 10 H 1.48492 * 109.47211 * 90.00249 * 9 7 5 11 11 H 1.48505 * 109.47062 * 210.00337 * 9 7 5 12 12 H 1.48502 * 109.47058 * 329.99602 * 9 7 5 13 13 N 1.46498 * 109.47214 * 294.99685 * 3 2 1 14 14 C 1.30184 * 119.99687 * 125.56571 * 13 3 2 15 15 O 1.35297 * 119.99736 * 186.13053 * 14 13 3 16 16 C 1.47312 * 120.00218 * 6.12686 * 14 13 3 17 17 C 1.31921 * 118.86450 * 66.04762 * 16 14 13 18 18 C 1.50268 * 122.60138 * 180.35455 * 17 16 14 19 19 O 1.42897 * 110.09624 * 344.37339 * 18 17 16 20 20 C 1.43281 * 113.09019 * 50.50288 * 19 18 17 21 21 C 1.50412 * 118.86768 * 246.06483 * 16 14 13 22 22 H 1.09003 * 109.47102 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47358 * 299.99761 * 1 2 3 24 24 H 1.09002 * 109.46802 * 60.00162 * 1 2 3 25 25 H 1.09002 * 109.47134 * 239.99760 * 2 1 3 26 26 H 1.09000 * 109.47203 * 120.00167 * 2 1 3 27 27 H 0.97004 * 119.99798 * 179.97438 * 8 7 5 28 28 H 0.96700 * 114.00294 * 359.97438 * 15 14 13 29 29 H 1.07999 * 118.69850 * 0.37181 * 17 16 14 30 30 H 1.09001 * 109.36168 * 224.18870 * 18 17 16 31 31 H 1.08994 * 109.36939 * 104.56734 * 18 17 16 32 32 H 1.09000 * 109.63928 * 50.90472 * 20 19 18 33 33 H 1.08997 * 109.63437 * 171.52435 * 20 19 18 34 34 H 1.08995 * 109.46625 * 43.32094 * 21 16 14 35 35 H 1.09005 * 109.43866 * 283.38526 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8804 1.3363 9 14 3.0962 0.1100 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7941 0.2360 3.8755 12 1 1.7881 0.8095 2.6396 13 7 1.6524 2.0975 -1.2518 14 6 0.9897 3.2176 -1.2223 15 8 0.5242 3.7587 -2.3717 16 6 0.7466 3.8960 0.0625 17 6 1.7747 4.3847 0.7292 18 6 1.6241 5.0850 2.0502 19 8 0.2578 5.4464 2.2614 20 6 -0.6494 4.3558 2.0602 21 6 -0.6652 4.0073 0.5692 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.8770 0.4826 2.1133 28 1 0.7330 3.2425 -3.1623 29 1 2.7637 4.2775 0.3088 30 1 2.2406 5.9839 2.0550 31 1 1.9502 4.4210 2.8506 32 1 -0.3166 3.4916 2.6349 33 1 -1.6500 4.6482 2.3787 34 1 -1.1792 3.0571 0.4240 35 1 -1.1875 4.7900 0.0190 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331076653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:10 Heat of formation + Delta-G solvation = -80.915204 kcal Electronic energy + Delta-G solvation = -18054.008644 eV Core-core repulsion = 15244.871456 eV Total energy + Delta-G solvation = -2809.137188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.83783 -39.28416 -37.47897 -35.11313 -34.14476 -32.68537 -31.99315 -29.40000 -26.85306 -24.94181 -24.66556 -23.15495 -21.53264 -19.48286 -18.80396 -18.21188 -17.85293 -17.20136 -16.59481 -16.03403 -15.64266 -15.35963 -15.17788 -14.81222 -14.43947 -14.26349 -14.21123 -13.65402 -13.54828 -13.40650 -12.95022 -12.74135 -12.51448 -12.35992 -11.93954 -11.75092 -11.59935 -11.36293 -10.90267 -10.80283 -10.13617 -9.98242 -9.73754 -8.35518 -6.39720 0.69722 1.25263 1.28511 1.39999 1.53808 2.24880 2.57162 2.93611 2.98809 3.59805 3.79431 3.95654 4.15454 4.26940 4.30893 4.33820 4.42529 4.47001 4.53309 4.61786 4.73188 4.77759 4.87241 4.99168 5.03166 5.14227 5.20062 5.33791 5.47103 5.61572 5.66788 6.07532 6.10196 6.53874 6.63792 7.15662 7.30326 8.81418 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019839 B = 0.010938 C = 0.009418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.051339 B = 2559.354792 C = 2972.308371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.197 3.803 4 H 0.021 0.979 5 C -0.509 4.509 6 H 0.023 0.977 7 C 0.020 3.980 8 N -0.944 5.944 9 Si 0.942 3.058 10 H -0.265 1.265 11 H -0.292 1.292 12 H -0.243 1.243 13 N -0.580 5.580 14 C 0.356 3.644 15 O -0.473 6.473 16 C -0.117 4.117 17 C -0.151 4.151 18 C 0.095 3.905 19 O -0.385 6.385 20 C 0.055 3.945 21 C -0.102 4.102 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.268 0.732 28 H 0.412 0.588 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.985 5.260 1.500 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.088 3.912 4 H 0.038 0.962 5 C -0.548 4.548 6 H 0.041 0.959 7 C -0.178 4.178 8 N -0.584 5.584 9 Si 0.768 3.232 10 H -0.192 1.192 11 H -0.220 1.220 12 H -0.167 1.167 13 N -0.312 5.312 14 C 0.127 3.873 15 O -0.270 6.270 16 C -0.120 4.120 17 C -0.172 4.172 18 C 0.019 3.981 19 O -0.304 6.304 20 C -0.021 4.021 21 C -0.140 4.140 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.268 0.732 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.783 5.241 1.395 15.747 hybrid contribution 0.898 -0.898 0.265 1.298 sum -13.885 4.343 1.660 14.643 Atomic orbital electron populations 1.21738 0.94451 1.02141 1.01477 1.21837 0.96461 0.97536 1.00183 1.19451 0.93632 0.91686 0.86448 0.96191 1.21065 0.90805 1.37732 1.05173 0.95880 1.25730 0.95864 0.96009 1.00193 1.70032 1.10704 1.46764 1.30903 0.85947 0.79773 0.79781 0.77723 1.19159 1.21952 1.16658 1.71964 1.15167 1.11261 1.32795 1.21919 0.89239 0.89920 0.86180 1.84914 1.74064 1.51947 1.16058 1.20050 0.97592 1.00833 0.93524 1.23447 0.98371 0.97152 0.98209 1.21498 0.84021 1.00545 0.92010 1.88066 1.15974 1.36035 1.90278 1.22885 0.95447 0.89942 0.93873 1.21043 0.91540 1.03791 0.97651 0.91339 0.92909 0.92603 0.92902 0.93902 0.92298 0.73193 0.88404 0.85501 0.91320 0.93097 0.84895 0.89136 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.80 71.98 0.71 -3.97 16 2 C -0.12 -5.28 5.11 30.60 0.16 -5.13 16 3 C 0.20 9.34 1.35 44.25 0.06 9.40 16 4 H 0.02 0.96 4.66 -2.39 -0.01 0.95 16 5 C -0.51 -29.59 9.42 25.60 0.24 -29.35 16 6 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 7 C 0.02 1.16 5.45 84.65 0.46 1.62 16 8 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 9 Si 0.94 43.95 24.41 68.60 1.67 45.62 16 10 H -0.27 -11.89 6.83 99.48 0.68 -11.22 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.24 -10.33 6.53 99.48 0.65 -9.68 16 13 N -0.58 -25.25 9.53 -438.99 -4.19 -29.43 16 14 C 0.36 13.19 7.39 87.33 0.65 13.84 16 15 O -0.47 -14.47 13.59 -85.84 -1.17 -15.63 16 16 C -0.12 -4.01 4.12 -18.42 -0.08 -4.08 16 17 C -0.15 -5.45 8.27 24.70 0.20 -5.24 16 18 C 0.10 2.81 7.04 71.10 0.50 3.31 16 19 O -0.38 -10.67 10.83 -148.98 -1.61 -12.28 16 20 C 0.05 1.29 6.88 72.02 0.50 1.78 16 21 C -0.10 -2.65 6.08 29.80 0.18 -2.47 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.05 1.80 7.75 -2.39 -0.02 1.78 16 25 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.04 1.91 3.22 -2.39 -0.01 1.90 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.41 9.86 8.97 -74.06 -0.66 9.19 16 29 H 0.10 4.17 7.99 -2.91 -0.02 4.14 16 30 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 35 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -69.90 285.87 -1.07 -70.98 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.34 Total: 19.52 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.57 Total: -20.29 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -3.89 Total: -87.92 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -2.78 Total: -27.92 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.67 Total: 45.62 kcal Total: -69.90 -1.07 -70.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331076653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.936 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds