Wall clock time and date at job start Sun Mar 29 2020 22:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 110.53778 * 2 1 4 4 C 1.34772 * 119.99851 * 57.38873 * 3 2 1 5 5 O 1.21685 * 120.00470 * 359.97438 * 4 3 2 6 6 C 1.46380 * 119.99768 * 179.97438 * 4 3 2 7 7 H 1.08005 * 119.99846 * 0.02562 * 6 4 3 8 8 C 1.40047 * 120.00053 * 179.97438 * 6 4 3 9 9 N 1.30678 * 119.99979 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 120.00177 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46890 * 60.00044 * 10 8 6 12 12 H 1.48497 * 109.47067 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47045 * 300.00294 * 10 8 6 14 14 C 1.54811 * 110.48830 * 122.61439 * 2 1 3 15 15 C 1.55005 * 102.08909 * 139.55658 * 14 2 1 16 16 O 1.44577 * 103.58750 * 323.05698 * 15 14 2 17 17 C 1.43753 * 106.86833 * 39.87738 * 16 15 14 18 18 H 1.09002 * 109.87438 * 93.16875 * 17 16 15 19 19 C 1.52996 * 109.87729 * 214.17209 * 17 16 15 20 20 C 1.53002 * 117.49888 * 229.54817 * 19 17 16 21 21 C 1.53000 * 117.50107 * 298.20579 * 19 17 16 22 22 H 1.09001 * 109.46997 * 182.61605 * 1 2 3 23 23 H 1.09004 * 109.46767 * 302.61517 * 1 2 3 24 24 H 1.08995 * 109.47398 * 62.61160 * 1 2 3 25 25 H 0.96999 * 119.99789 * 237.37944 * 3 2 1 26 26 H 0.97001 * 119.99657 * 179.97438 * 9 8 6 27 27 H 1.08994 * 110.91186 * 257.75547 * 14 2 1 28 28 H 1.08998 * 110.90857 * 21.36372 * 14 2 1 29 29 H 1.09004 * 110.61495 * 81.47925 * 15 14 2 30 30 H 1.09000 * 110.61793 * 204.47716 * 15 14 2 31 31 H 1.09002 * 115.54951 * 83.87791 * 19 17 16 32 32 H 1.09000 * 117.49996 * 215.00804 * 20 19 17 33 33 H 1.08999 * 117.49664 * 0.02562 * 20 19 17 34 34 H 1.09008 * 117.49673 * 359.97438 * 21 19 17 35 35 H 1.08999 * 117.49942 * 144.97366 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0440 1.3719 0.0000 4 6 1.6913 2.2236 0.9832 5 8 0.9456 1.8533 1.8706 6 6 2.2053 3.5942 0.9835 7 1 2.8668 3.9230 0.1955 8 6 1.8385 4.4794 2.0048 9 7 1.0377 4.0817 2.9578 10 14 2.4938 6.2288 2.0048 11 1 2.0648 6.9180 0.7614 12 1 1.9609 6.9570 3.1841 13 1 3.9772 6.2016 2.0691 14 6 2.0719 -0.7816 1.2215 15 6 3.2660 -1.5561 0.6076 16 8 2.7977 -1.9109 -0.7134 17 6 2.0693 -0.7780 -1.2159 18 1 2.7329 -0.1400 -1.7995 19 6 0.9052 -1.2531 -2.0876 20 6 0.7477 -0.6108 -3.4673 21 6 1.2459 -2.0532 -3.3465 22 1 -0.3633 -1.0266 0.0469 23 1 -0.3633 0.5539 0.8657 24 1 -0.3634 0.4727 -0.9124 25 1 2.6382 1.6672 -0.7075 26 1 0.7839 4.6948 3.6654 27 1 2.4103 -0.0992 2.0011 28 1 1.3198 -1.4693 1.6081 29 1 4.1456 -0.9157 0.5418 30 1 3.4840 -2.4506 1.1911 31 1 -0.0046 -1.5224 -1.5510 32 1 -0.2656 -0.4575 -3.8384 33 1 1.4738 0.1499 -3.7541 34 1 2.2995 -2.2406 -3.5539 35 1 0.5605 -2.8490 -3.6379 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335297509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:01 Heat of formation + Delta-G solvation = -54.697193 kcal Electronic energy + Delta-G solvation = -17871.278963 eV Core-core repulsion = 15063.278673 eV Total energy + Delta-G solvation = -2808.000290 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99845 -37.07886 -36.34794 -33.71375 -32.32499 -30.36494 -29.27811 -26.16799 -25.93830 -22.78843 -22.24040 -21.50698 -19.70830 -18.54936 -17.34799 -16.24881 -15.84625 -15.29924 -14.95873 -14.46970 -13.89556 -13.86304 -13.61895 -12.71792 -12.52992 -12.37676 -11.91514 -11.61311 -11.44871 -11.31183 -11.05576 -10.97210 -10.75277 -10.49949 -10.46280 -10.26829 -10.15245 -10.06924 -9.84722 -9.34603 -8.85911 -7.55331 -7.51174 -6.19638 -4.66122 3.14057 3.19364 3.20863 3.73696 4.07421 4.33526 4.55189 4.62959 4.90713 4.96481 5.13623 5.20469 5.36080 5.42808 5.60578 5.68795 5.70419 5.73311 5.87573 5.98962 6.04028 6.20053 6.21341 6.27738 6.40647 6.48282 6.53753 6.80182 7.11846 7.17475 7.41500 7.87850 8.10824 8.30747 9.00796 9.51448 10.58048 10.77063 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.034879 B = 0.006649 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.583677 B = 4210.205059 C = 4456.876585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 N -0.756 5.756 4 C 0.559 3.441 5 O -0.572 6.572 6 C -0.547 4.547 7 H 0.065 0.935 8 C 0.089 3.911 9 N -0.767 5.767 10 Si 0.906 3.094 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.269 1.269 14 C -0.153 4.153 15 C 0.045 3.955 16 O -0.374 6.374 17 C 0.106 3.894 18 H 0.066 0.934 19 C -0.152 4.152 20 C -0.173 4.173 21 C -0.173 4.173 22 H 0.048 0.952 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.378 0.622 26 H 0.268 0.732 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 -7.969 -8.359 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.079 3.921 3 N -0.411 5.411 4 C 0.363 3.637 5 O -0.455 6.455 6 C -0.584 4.584 7 H 0.084 0.916 8 C -0.131 4.131 9 N -0.396 5.396 10 Si 0.731 3.269 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.193 1.193 14 C -0.192 4.192 15 C -0.032 4.032 16 O -0.293 6.293 17 C 0.048 3.952 18 H 0.084 0.916 19 C -0.170 4.170 20 C -0.210 4.210 21 C -0.210 4.210 22 H 0.067 0.933 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.210 0.790 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.126 -8.393 -7.630 11.398 hybrid contribution 0.656 1.251 -0.244 1.434 sum 1.782 -7.141 -7.874 10.779 Atomic orbital electron populations 1.22256 0.94436 1.00514 1.03767 1.21038 0.94494 0.84531 0.92042 1.46285 1.54165 1.09919 1.30781 1.18112 0.80704 0.85065 0.79820 1.90555 1.39341 1.78015 1.37604 1.20862 1.31413 0.95129 1.10985 0.91649 1.25672 0.93442 0.99583 0.94355 1.70002 1.25666 1.35203 1.08738 0.86465 0.79757 0.82471 0.78237 1.19328 1.20574 1.19343 1.23459 0.97276 0.99166 0.99286 1.23613 0.96974 0.99200 0.83373 1.88872 1.71508 1.37459 1.31503 1.22481 0.91314 0.87118 0.94269 0.91587 1.22561 1.00154 1.04794 0.89477 1.22957 1.02540 0.96189 0.99342 1.22852 1.01925 0.94214 1.02050 0.93340 0.89299 0.92971 0.78959 0.92089 0.88851 0.90950 0.92384 0.89544 0.86357 0.88693 0.88794 0.88856 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 6.99 37.16 0.26 -2.66 16 2 C 0.17 3.19 0.95 -130.29 -0.12 3.06 16 3 N -0.76 -16.42 5.16 -47.58 -0.25 -16.67 16 4 C 0.56 15.16 6.95 -12.99 -0.09 15.07 16 5 O -0.57 -17.29 11.99 5.20 0.06 -17.23 16 6 C -0.55 -15.08 9.54 -35.63 -0.34 -15.42 16 7 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16 8 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 9 N -0.77 -22.49 11.83 55.55 0.66 -21.83 16 10 Si 0.91 19.90 29.56 -169.99 -5.02 14.88 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 14 C -0.15 -2.88 5.95 -24.72 -0.15 -3.03 16 15 C 0.04 0.71 7.72 38.22 0.30 1.01 16 16 O -0.37 -6.26 11.15 -35.23 -0.39 -6.65 16 17 C 0.11 1.73 3.40 -26.16 -0.09 1.64 16 18 H 0.07 1.06 7.26 -51.93 -0.38 0.68 16 19 C -0.15 -2.16 4.16 -90.62 -0.38 -2.54 16 20 C -0.17 -2.13 10.18 -26.69 -0.27 -2.40 16 21 C -0.17 -2.11 10.20 -26.70 -0.27 -2.38 16 22 H 0.05 0.81 6.70 -51.93 -0.35 0.46 16 23 H 0.09 2.07 6.00 -51.93 -0.31 1.76 16 24 H 0.05 0.95 7.42 -51.93 -0.39 0.57 16 25 H 0.38 7.42 8.08 -40.82 -0.33 7.09 16 26 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 27 H 0.09 2.06 6.96 -51.93 -0.36 1.70 16 28 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.12 1.71 5.57 -51.93 -0.29 1.42 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.13 8.06 -51.93 -0.42 0.72 16 34 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -31.53 283.31 -6.81 -38.34 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.89 Total: 10.19 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.25 Total: -5.30 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.41 Total: -38.50 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.33 Total: -23.88 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.53 -6.81 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335297509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.353 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds