Wall clock time and date at job start Sun Mar 29 2020 22:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 112.83884 * 2 1 4 4 C 1.55564 * 113.53732 * 228.18383 * 2 1 3 5 5 H 1.09003 * 112.67825 * 154.64437 * 4 2 1 6 6 N 1.46494 * 114.17070 * 24.28050 * 4 2 1 7 7 C 1.34778 * 120.00392 * 156.74668 * 6 4 2 8 8 O 1.21691 * 119.99688 * 0.02562 * 7 6 4 9 9 C 1.46367 * 120.00176 * 179.97438 * 7 6 4 10 10 H 1.08001 * 120.00169 * 0.02562 * 9 7 6 11 11 C 1.40047 * 120.00113 * 180.02562 * 9 7 6 12 12 N 1.30673 * 120.00159 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00242 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46986 * 60.00520 * 13 11 9 15 15 H 1.48507 * 109.47193 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47234 * 300.00308 * 13 11 9 17 17 C 1.53741 * 87.91858 * 269.34331 * 4 2 1 18 18 H 1.08996 * 116.82182 * 95.45438 * 17 4 2 19 19 C 1.54496 * 113.67321 * 232.59923 * 17 4 2 20 20 C 1.54449 * 104.13908 * 93.14466 * 19 17 4 21 21 O 1.44401 * 104.80382 * 335.87050 * 20 19 17 22 22 C 1.44251 * 105.39916 * 40.57885 * 21 20 19 23 23 H 1.09002 * 114.89932 * 88.68261 * 22 21 20 24 24 H 1.08997 * 109.46754 * 308.49981 * 1 2 3 25 25 H 1.09005 * 109.46955 * 68.49989 * 1 2 3 26 26 H 1.08996 * 109.46920 * 188.49995 * 1 2 3 27 27 H 1.08998 * 109.46559 * 171.50105 * 3 2 1 28 28 H 1.08998 * 109.47076 * 291.50310 * 3 2 1 29 29 H 1.09002 * 109.46907 * 51.49989 * 3 2 1 30 30 H 0.97003 * 119.99971 * 336.75862 * 6 4 2 31 31 H 0.97000 * 120.00397 * 179.97438 * 12 11 9 32 32 H 1.09004 * 110.49441 * 334.47931 * 19 17 4 33 33 H 1.09004 * 110.61604 * 211.87170 * 19 17 4 34 34 H 1.08999 * 110.37196 * 217.04123 * 20 19 17 35 35 H 1.08997 * 110.46202 * 94.75028 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1239 1.4101 0.0000 4 6 2.1513 -0.9509 -1.0629 5 1 3.1524 -0.6448 -1.3668 6 7 1.2739 -1.2324 -2.2018 7 6 1.8016 -1.6244 -3.3784 8 8 3.0070 -1.7450 -3.4946 9 6 0.9249 -1.9061 -4.5161 10 1 -0.1449 -1.7995 -4.4129 11 6 1.4732 -2.3140 -5.7385 12 7 2.7675 -2.4435 -5.8633 13 14 0.3544 -2.6728 -7.1907 14 1 -0.4183 -1.4520 -7.5338 15 1 1.1751 -3.0841 -8.3581 16 1 -0.5829 -3.7683 -6.8347 17 6 2.1452 -2.0571 0.0048 18 1 1.2924 -2.7360 0.0047 19 6 3.5164 -2.7427 0.1956 20 6 4.1771 -1.9514 1.3457 21 8 3.5378 -0.6569 1.3178 22 6 2.1433 -0.9238 1.0625 23 1 1.5378 -1.0922 1.9531 24 1 -0.3633 0.6397 0.8043 25 1 -0.3633 0.3767 -0.9562 26 1 -0.3633 -1.0163 0.1519 27 1 3.2016 1.3503 0.1519 28 1 1.9178 1.8911 -0.9561 29 1 1.6754 1.9932 0.8043 30 1 0.3131 -1.1364 -2.1092 31 1 3.1473 -2.7263 -6.7099 32 1 4.1124 -2.6638 -0.7137 33 1 3.3872 -3.7880 0.4764 34 1 5.2480 -1.8495 1.1700 35 1 3.9952 -2.4439 2.3008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376926859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:35 Heat of formation + Delta-G solvation = -68.574996 kcal Electronic energy + Delta-G solvation = -17885.780075 eV Core-core repulsion = 15077.177999 eV Total energy + Delta-G solvation = -2808.602077 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79880 -37.09154 -35.53932 -32.60752 -31.90202 -31.22474 -28.60720 -27.17150 -26.44969 -23.71455 -22.80149 -20.38355 -19.76846 -18.16885 -17.05316 -16.23868 -15.60878 -15.33900 -14.99806 -14.21926 -13.94136 -13.60931 -13.25933 -12.99856 -12.48685 -12.26278 -12.12716 -11.87235 -11.65356 -11.50882 -11.27454 -11.02051 -10.88924 -10.65139 -10.45344 -10.40039 -10.28973 -10.12052 -9.71018 -9.19638 -8.83357 -7.58311 -7.44231 -6.16979 -4.62996 3.15941 3.20897 3.22656 3.90228 4.11306 4.54694 4.58718 4.78000 4.95172 5.09824 5.25121 5.33046 5.41440 5.49365 5.54273 5.67731 5.84675 5.87350 5.92448 5.95540 6.02062 6.09632 6.18006 6.24662 6.31899 6.51012 6.58993 6.68377 6.77016 7.14004 7.44024 7.95278 8.14412 8.35588 9.03604 9.57051 10.61976 10.81114 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.006820 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.897440 B = 4104.652246 C = 4501.991807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.128 4.128 4 C 0.169 3.831 5 H 0.104 0.896 6 N -0.754 5.754 7 C 0.555 3.445 8 O -0.580 6.580 9 C -0.547 4.547 10 H 0.066 0.934 11 C 0.088 3.912 12 N -0.768 5.768 13 Si 0.907 3.093 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.269 1.269 17 C -0.151 4.151 18 H 0.102 0.898 19 C -0.147 4.147 20 C 0.049 3.951 21 O -0.359 6.359 22 C 0.055 3.945 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.380 0.620 31 H 0.268 0.732 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 1.968 12.055 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 C -0.185 4.185 4 C 0.061 3.939 5 H 0.122 0.878 6 N -0.407 5.407 7 C 0.360 3.640 8 O -0.462 6.462 9 C -0.584 4.584 10 H 0.084 0.916 11 C -0.132 4.132 12 N -0.396 5.396 13 Si 0.731 3.269 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.193 1.193 17 C -0.172 4.172 18 H 0.121 0.879 19 C -0.185 4.185 20 C -0.028 4.028 21 O -0.278 6.278 22 C -0.003 4.003 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.213 0.787 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.209 2.039 11.841 12.217 hybrid contribution -1.100 -0.482 -0.625 1.354 sum -3.309 1.557 11.216 11.797 Atomic orbital electron populations 1.21487 0.92903 1.01837 1.02252 1.22563 0.95517 0.95472 0.95870 1.21543 1.01467 0.94467 1.01055 1.22295 0.96155 0.90979 0.84483 0.87826 1.46104 1.08165 1.74910 1.11541 1.18214 0.88382 0.76500 0.80954 1.90591 1.15724 1.56679 1.83252 1.20859 0.93549 1.48892 0.95099 0.91592 1.25693 0.94928 0.93197 0.99338 1.70009 1.11339 1.33501 1.24795 0.86460 0.80519 0.79393 0.80505 1.19300 1.20577 1.19342 1.24557 0.97897 0.96507 0.98220 0.87949 1.22861 0.96707 0.99191 0.99730 1.23454 0.98034 0.83916 0.97357 1.88974 1.19000 1.26875 1.92963 1.24028 0.83940 0.96909 0.95410 0.89893 0.92501 0.91327 0.92310 0.91607 0.92587 0.93206 0.78718 0.92102 0.89615 0.91323 0.89357 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 7.98 37.16 0.30 -1.36 16 2 C -0.09 -1.44 1.36 -152.84 -0.21 -1.65 16 3 C -0.13 -1.92 9.09 37.16 0.34 -1.59 16 4 C 0.17 3.31 3.03 -66.18 -0.20 3.11 16 5 H 0.10 2.41 7.30 -51.93 -0.38 2.03 16 6 N -0.75 -16.78 5.26 -53.52 -0.28 -17.07 16 7 C 0.56 15.74 7.75 -12.99 -0.10 15.64 16 8 O -0.58 -18.69 14.65 5.20 0.08 -18.61 16 9 C -0.55 -15.44 9.54 -35.64 -0.34 -15.78 16 10 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 11 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 12 N -0.77 -23.08 11.83 55.55 0.66 -22.42 16 13 Si 0.91 20.17 29.56 -169.99 -5.02 15.14 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 17 C -0.15 -2.54 4.47 -88.38 -0.39 -2.93 16 18 H 0.10 1.65 8.13 -51.93 -0.42 1.23 16 19 C -0.15 -2.37 6.67 -25.19 -0.17 -2.53 16 20 C 0.05 0.68 7.63 37.92 0.29 0.97 16 21 O -0.36 -5.76 9.95 -35.23 -0.35 -6.11 16 22 C 0.06 0.83 4.64 -25.37 -0.12 0.71 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.92 7.38 -51.93 -0.38 0.54 16 26 H 0.06 0.72 7.77 -51.93 -0.40 0.32 16 27 H 0.06 1.06 7.09 -51.93 -0.37 0.69 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.38 7.46 6.81 -40.82 -0.28 7.19 16 31 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 32 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -33.34 285.79 -6.47 -39.82 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.15 Total: 7.98 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.70 Total: -3.04 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.38 Total: -39.49 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.27 Total: -24.72 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.34 -6.47 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376926859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.760 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds