Wall clock time and date at job start Sun Mar 29 2020 22:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48503 * 109.47051 * 266.23036 * 3 2 1 5 5 H 1.48501 * 109.46751 * 26.22779 * 3 2 1 6 6 H 1.48497 * 109.47081 * 146.22686 * 3 2 1 7 7 C 1.37880 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00414 * 1.54697 * 7 2 1 9 9 C 1.50696 * 119.99568 * 181.54829 * 7 2 1 10 10 C 1.52997 * 115.55426 * 87.23347 * 9 7 2 11 11 N 1.46500 * 109.46807 * 64.74971 * 10 9 7 12 12 C 1.34783 * 119.99743 * 185.52727 * 11 10 9 13 13 O 1.21276 * 120.00101 * 354.65997 * 12 11 10 14 14 C 1.50703 * 119.99651 * 174.38135 * 12 11 10 15 15 H 1.08994 * 110.75096 * 30.05619 * 14 12 11 16 16 C 1.55314 * 110.84513 * 153.74997 * 14 12 11 17 17 C 1.54938 * 100.94287 * 152.32485 * 16 14 12 18 18 O 1.43647 * 105.13409 * 323.55632 * 17 16 14 19 19 C 1.43233 * 109.97489 * 24.42968 * 18 17 16 20 20 C 1.53009 * 117.50000 * 232.90255 * 9 7 2 21 21 C 1.53003 * 117.49887 * 301.56035 * 9 7 2 22 22 H 0.97002 * 119.99582 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47221 * 304.75154 * 10 9 7 24 24 H 1.08998 * 109.47467 * 184.75049 * 10 9 7 25 25 H 0.96998 * 120.00313 * 5.52636 * 11 10 9 26 26 H 1.09006 * 111.12249 * 270.24102 * 16 14 12 27 27 H 1.08996 * 111.12428 * 34.40458 * 16 14 12 28 28 H 1.08996 * 110.31395 * 204.64228 * 17 16 14 29 29 H 1.08997 * 110.39603 * 82.51049 * 17 16 14 30 30 H 1.09007 * 109.82915 * 238.77978 * 19 18 17 31 31 H 1.08994 * 109.83267 * 117.80340 * 19 18 17 32 32 H 1.08998 * 117.50065 * 215.00398 * 20 9 7 33 33 H 1.09002 * 117.49425 * 0.02562 * 20 9 7 34 34 H 1.08998 * 117.49985 * 359.97438 * 21 9 7 35 35 H 1.09006 * 117.49416 * 144.97755 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5765 2.0004 -1.3971 5 1 1.4090 2.6743 0.6188 6 1 3.5046 1.4645 0.7783 7 6 2.0045 -1.1941 -0.0005 8 1 1.4649 -2.1292 -0.0262 9 6 3.5111 -1.1943 0.0347 10 6 4.1386 -1.1471 1.4293 11 7 3.8003 -2.3717 2.1587 12 6 4.1523 -2.5041 3.4530 13 8 4.8322 -1.6534 3.9866 14 6 3.6957 -3.7063 4.2387 15 1 3.5797 -4.5723 3.5871 16 6 4.6783 -4.0120 5.4020 17 6 3.7290 -4.6980 6.4164 18 8 2.4782 -4.0033 6.2883 19 6 2.3816 -3.4046 4.9907 20 6 4.2429 -1.9979 -1.0423 21 6 4.2443 -0.4680 -1.0948 22 1 -0.4849 0.8401 0.0004 23 1 3.7542 -0.2832 1.9716 24 1 5.2217 -1.0661 1.3378 25 1 3.3230 -3.0872 1.7102 26 1 5.4677 -4.6918 5.0811 27 1 5.0967 -3.0939 5.8144 28 1 4.1179 -4.5932 7.4292 29 1 3.6038 -5.7516 6.1669 30 1 2.2513 -2.3269 5.0895 31 1 1.5385 -3.8320 4.4480 32 1 5.1713 -2.4928 -0.7573 33 1 3.6345 -2.5260 -1.7766 34 1 3.6370 0.0096 -1.8637 35 1 5.1735 0.0438 -0.8442 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404106754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:14 Heat of formation + Delta-G solvation = -63.701063 kcal Electronic energy + Delta-G solvation = -17342.179020 eV Core-core repulsion = 14533.788293 eV Total energy + Delta-G solvation = -2808.390727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08791 -38.35724 -37.02810 -33.53715 -32.23233 -32.14875 -29.47573 -26.81417 -25.32669 -22.92466 -22.15623 -21.74914 -19.81917 -19.13712 -17.34576 -16.77099 -16.19520 -15.66159 -15.17234 -14.92188 -14.58766 -14.25466 -13.76403 -13.32998 -13.16105 -12.83305 -12.52479 -12.20947 -12.08808 -11.52470 -11.23757 -11.17380 -10.96246 -10.84412 -10.52824 -10.25361 -9.80733 -9.62108 -9.38959 -9.24686 -8.71600 -8.61246 -8.39895 -6.20179 -4.25303 2.90105 3.25222 3.35893 3.39380 3.54248 3.90258 4.35734 4.43289 4.75477 4.90920 4.93976 5.08080 5.11012 5.18547 5.30728 5.61342 5.64007 5.67430 5.79725 5.91340 5.95015 6.00426 6.11531 6.17041 6.36107 6.44128 6.63980 6.91102 6.92825 7.00936 7.04509 7.62560 8.05064 8.35925 8.63879 8.79423 9.42659 10.91015 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029646 B = 0.006690 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.252907 B = 4184.625495 C = 4544.847232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.079 0.921 9 C -0.017 4.017 10 C 0.155 3.845 11 N -0.698 5.698 12 C 0.517 3.483 13 O -0.552 6.552 14 C -0.145 4.145 15 H 0.103 0.897 16 C -0.140 4.140 17 C 0.052 3.948 18 O -0.383 6.383 19 C 0.069 3.931 20 C -0.179 4.179 21 C -0.194 4.194 22 H 0.266 0.734 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.404 0.596 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.970 -8.277 6.275 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.184 1.184 7 C -0.529 4.529 8 H 0.097 0.903 9 C -0.018 4.018 10 C 0.032 3.968 11 N -0.347 5.347 12 C 0.302 3.698 13 O -0.431 6.431 14 C -0.167 4.167 15 H 0.121 0.879 16 C -0.178 4.178 17 C -0.025 4.025 18 O -0.302 6.302 19 C -0.008 4.008 20 C -0.216 4.216 21 C -0.232 4.232 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.239 0.761 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.097 -7.510 6.791 12.965 hybrid contribution 0.269 0.629 -0.621 0.924 sum 8.367 -6.882 6.170 12.467 Atomic orbital electron populations 1.69882 1.06355 1.27348 1.49418 1.24974 0.94604 0.99147 0.93585 0.86856 0.80412 0.83239 0.78681 1.20251 1.22079 1.18398 1.20168 0.86007 0.94544 1.52177 0.90347 1.19640 0.95216 1.00837 0.86110 1.21169 0.96715 0.86180 0.92770 1.45888 1.57545 1.20633 1.10615 1.20068 0.80271 0.87195 0.82283 1.90655 1.38990 1.43573 1.69893 1.22865 0.97334 0.98264 0.98191 0.87914 1.23229 0.97714 1.02602 0.94245 1.23377 0.83484 0.95707 0.99888 1.88402 1.37776 1.70809 1.33212 1.23001 0.95487 0.99308 0.83039 1.22855 1.01145 0.93201 1.04388 1.22969 1.01515 0.94808 1.03895 0.92405 0.91558 0.93863 0.76123 0.89735 0.88592 0.89637 0.92122 0.90475 0.90156 0.90888 0.89341 0.89054 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.26 24.70 -169.99 -4.20 17.06 16 4 H -0.28 -6.50 7.04 56.52 0.40 -6.10 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.06 6.03 56.52 0.34 -5.72 16 7 C -0.49 -12.68 9.30 -34.44 -0.32 -13.00 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C -0.02 -0.36 0.84 -155.66 -0.13 -0.49 16 10 C 0.16 3.20 5.21 -4.04 -0.02 3.18 16 11 N -0.70 -12.53 5.45 -60.29 -0.33 -12.86 16 12 C 0.52 9.00 6.85 -10.98 -0.08 8.93 16 13 O -0.55 -11.50 15.86 5.56 0.09 -11.42 16 14 C -0.14 -1.93 3.39 -89.82 -0.30 -2.24 16 15 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.14 -1.65 6.50 -24.48 -0.16 -1.81 16 17 C 0.05 0.56 7.78 38.18 0.30 0.86 16 18 O -0.38 -5.49 11.36 -35.23 -0.40 -5.89 16 19 C 0.07 0.98 7.39 37.88 0.28 1.26 16 20 C -0.18 -3.32 9.96 -26.69 -0.27 -3.59 16 21 C -0.19 -3.91 7.56 -26.69 -0.20 -4.11 16 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.07 1.54 6.91 -51.93 -0.36 1.18 16 24 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 25 H 0.40 6.59 8.46 -40.82 -0.35 6.24 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 1.32 7.21 -51.93 -0.37 0.94 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.24 7.81 -51.92 -0.41 0.83 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.09 1.94 7.02 -51.93 -0.36 1.57 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 288.75 15.07 4.35 4.35 Total: -1.00 -30.52 288.75 -5.99 -36.51 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.27 Total: 6.51 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.00 Total: -8.91 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.45 Total: -38.22 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.31 Total: -17.31 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.20 Total: 17.06 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.52 -5.99 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404106754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.193 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds