Wall clock time and date at job start Sun Mar 29 2020 21:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99712 * 2 1 4 4 H 1.48496 * 109.46660 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47081 * 299.99859 * 3 2 1 6 6 H 1.48503 * 109.47160 * 60.00127 * 3 2 1 7 7 C 1.38945 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99369 * 199.30576 * 7 2 1 9 9 N 1.37099 * 120.00424 * 19.30903 * 7 2 1 10 10 C 1.34781 * 119.99849 * 42.40541 * 9 7 2 11 11 O 1.21292 * 119.99857 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99665 * 180.27647 * 10 9 7 13 13 C 1.53000 * 109.46974 * 179.72217 * 12 10 9 14 14 H 1.09000 * 110.33493 * 307.25245 * 13 12 10 15 15 C 1.54482 * 110.37173 * 184.99757 * 13 12 10 16 16 C 1.54508 * 104.06131 * 217.19270 * 15 13 12 17 17 C 1.54478 * 104.06502 * 0.02562 * 16 15 13 18 18 O 1.44424 * 104.80378 * 23.97583 * 17 16 15 19 19 C 1.46491 * 119.99888 * 222.40925 * 9 7 2 20 20 C 1.53000 * 117.50073 * 3.34906 * 19 9 7 21 21 C 1.53001 * 60.00212 * 252.51215 * 20 19 9 22 22 H 0.96998 * 120.00020 * 354.75631 * 1 2 3 23 23 H 1.09003 * 109.47296 * 299.72604 * 12 10 9 24 24 H 1.09004 * 109.47255 * 59.72970 * 12 10 9 25 25 H 1.08999 * 110.51032 * 335.84295 * 15 13 12 26 26 H 1.09001 * 110.50773 * 98.41191 * 15 13 12 27 27 H 1.08996 * 110.50980 * 118.65218 * 16 15 13 28 28 H 1.09004 * 110.50857 * 241.21611 * 16 15 13 29 29 H 1.09002 * 110.36917 * 142.81156 * 17 16 15 30 30 H 1.08996 * 110.37046 * 265.14336 * 17 16 15 31 31 H 1.09005 * 115.55008 * 149.06011 * 19 9 7 32 32 H 1.08999 * 117.49830 * 0.02562 * 20 19 9 33 33 H 1.09004 * 117.50045 * 145.02184 * 20 19 9 34 34 H 1.08996 * 117.49643 * 252.50971 * 21 20 19 35 35 H 1.08994 * 117.51856 * 107.48272 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0433 -1.2297 0.3087 9 7 1.3812 -2.3571 -0.3936 10 6 0.5727 -2.3506 -1.4720 11 8 0.4008 -1.3242 -2.0949 12 6 -0.1221 -3.6174 -1.9004 13 6 -0.9779 -3.3365 -3.1371 14 1 -1.6409 -2.4908 -2.9548 15 6 -1.7968 -4.5891 -3.5203 16 6 -1.7956 -4.5802 -5.0654 17 6 -0.9756 -3.3237 -5.4329 18 8 -0.1361 -3.0815 -4.2830 19 6 1.5893 -3.5969 0.3584 20 6 2.4551 -3.5224 1.6177 21 6 2.9967 -4.1971 0.3557 22 1 -0.4850 0.8365 0.0768 23 1 0.6222 -4.3774 -2.1384 24 1 -0.7593 -3.9739 -1.0910 25 1 -1.3144 -5.4908 -3.1431 26 1 -2.8141 -4.5124 -3.1366 27 1 -1.3128 -5.4776 -5.4520 28 1 -2.8133 -4.5005 -5.4475 29 1 -0.3648 -3.5140 -6.3155 30 1 -1.6380 -2.4753 -5.6047 31 1 0.7471 -4.2888 0.3665 32 1 2.8696 -2.5509 1.8868 33 1 2.1826 -4.1654 2.4547 34 1 3.0804 -5.2838 0.3625 35 1 3.7677 -3.6696 -0.2059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408047444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:42 Heat of formation + Delta-G solvation = -66.593475 kcal Electronic energy + Delta-G solvation = -17794.538671 eV Core-core repulsion = 14986.022519 eV Total energy + Delta-G solvation = -2808.516151 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74134 -39.74892 -37.65317 -34.79330 -33.31387 -32.80116 -32.14625 -28.14104 -26.24936 -23.40657 -23.00641 -22.64000 -21.90641 -20.85874 -18.32089 -17.79466 -17.25883 -16.76507 -16.50270 -16.37346 -15.77364 -15.42917 -14.94492 -14.57438 -14.35266 -13.83447 -13.31249 -13.06497 -12.92534 -12.70402 -12.55683 -12.49416 -12.20656 -12.12840 -11.99581 -11.94166 -11.62938 -11.42579 -11.18575 -10.71161 -10.62638 -9.84991 -8.92828 -8.18544 -5.93451 1.32678 1.41440 1.48413 2.28361 2.47309 3.06432 3.11985 3.16420 3.42286 3.74779 3.81876 4.09307 4.13539 4.17652 4.27388 4.30914 4.37729 4.47372 4.66437 4.68818 4.79094 4.90320 4.91216 4.96046 5.01758 5.10825 5.17847 5.27795 5.32373 5.47484 5.51722 6.07381 6.22281 7.06618 7.27836 7.76328 8.45178 8.90671 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.008636 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.799143 B = 3241.293990 C = 4088.408281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.020 3.980 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.298 1.298 6 H -0.270 1.270 7 C -0.355 4.355 8 H 0.074 0.926 9 N -0.451 5.451 10 C 0.464 3.536 11 O -0.580 6.580 12 C -0.115 4.115 13 C 0.092 3.908 14 H 0.035 0.965 15 C -0.142 4.142 16 C -0.143 4.143 17 C 0.029 3.971 18 O -0.397 6.397 19 C 0.046 3.954 20 C -0.171 4.171 21 C -0.183 4.183 22 H 0.257 0.743 23 H 0.102 0.898 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 -13.182 -3.584 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.483 4.483 8 H 0.092 0.908 9 N -0.173 5.173 10 C 0.253 3.747 11 O -0.460 6.460 12 C -0.155 4.155 13 C 0.034 3.966 14 H 0.053 0.947 15 C -0.180 4.180 16 C -0.180 4.180 17 C -0.048 4.048 18 O -0.317 6.317 19 C -0.059 4.059 20 C -0.209 4.209 21 C -0.222 4.222 22 H 0.066 0.934 23 H 0.120 0.880 24 H 0.127 0.873 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.147 0.853 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.538 -12.468 -3.954 13.324 hybrid contribution 0.142 1.436 0.084 1.445 sum -2.396 -11.032 -3.870 11.935 Atomic orbital electron populations 1.69945 1.07924 1.27287 1.45421 1.26000 0.95537 1.02463 0.94616 0.85305 0.79268 0.79137 0.77055 1.18337 1.22486 1.19527 1.19096 0.95115 0.85731 1.48367 0.90805 1.43081 1.43869 1.07102 1.23201 1.20771 0.82911 0.90370 0.80632 1.90493 1.64044 1.35941 1.55541 1.21647 0.99996 0.96361 0.97545 1.22682 0.91052 0.96618 0.86264 0.94651 1.23005 1.00995 0.97328 0.96635 1.22909 1.01692 0.98360 0.95046 1.23612 0.94004 0.97227 0.89932 1.89232 1.35934 1.90718 1.15788 1.22023 0.94872 0.90055 0.98964 1.23117 1.03648 1.02182 0.91949 1.23320 0.96999 1.00731 1.01107 0.93376 0.88018 0.87319 0.88777 0.89130 0.88999 0.88710 0.88040 0.93453 0.85256 0.90355 0.86205 0.85524 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.84 11.64 21.66 0.25 -54.59 16 2 C 0.02 1.17 4.35 84.92 0.37 1.54 16 3 Si 0.97 47.93 29.60 68.60 2.03 49.96 16 4 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.36 -20.52 8.00 84.04 0.67 -19.84 16 8 H 0.07 4.15 7.18 -2.91 -0.02 4.13 16 9 N -0.45 -23.57 2.85 -613.13 -1.75 -25.32 16 10 C 0.46 24.96 6.90 87.66 0.60 25.57 16 11 O -0.58 -37.23 13.23 3.20 0.04 -37.19 16 12 C -0.12 -4.51 3.94 29.85 0.12 -4.39 16 13 C 0.09 3.45 2.74 31.10 0.09 3.54 16 14 H 0.04 1.57 7.91 -2.39 -0.02 1.55 16 15 C -0.14 -3.47 6.63 31.61 0.21 -3.26 16 16 C -0.14 -3.01 7.09 31.61 0.22 -2.78 16 17 C 0.03 0.84 7.63 72.48 0.55 1.39 16 18 O -0.40 -16.40 10.92 -142.71 -1.56 -17.96 16 19 C 0.05 1.79 5.88 44.99 0.26 2.06 16 20 C -0.17 -5.95 9.79 30.59 0.30 -5.65 16 21 C -0.18 -5.94 10.36 30.60 0.32 -5.62 16 22 H 0.26 15.59 8.32 -92.71 -0.77 14.82 16 23 H 0.10 3.51 8.11 -2.39 -0.02 3.49 16 24 H 0.11 3.65 7.56 -2.38 -0.02 3.63 16 25 H 0.09 1.94 7.87 -2.39 -0.02 1.92 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.13 4.24 6.95 -2.38 -0.02 4.23 16 32 H 0.08 3.17 6.68 -2.39 -0.02 3.16 16 33 H 0.12 3.26 8.14 -2.38 -0.02 3.24 16 34 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -79.73 288.58 3.80 -75.92 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.07 Total: 16.63 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 3.72 Total: -7.46 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -1.49 Total: -79.90 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -1.52 Total: -55.15 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -79.73 3.80 -75.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408047444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.331 kcal (2) G-P(sol) polarization free energy of solvation -79.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds