Wall clock time and date at job start Sun Mar 29 2020 22:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09010 * 109.53845 * 190.12812 * 3 2 1 5 5 C 1.53093 * 109.50770 * 70.02200 * 3 2 1 6 6 O 1.43016 * 109.26022 * 183.21192 * 5 3 2 7 7 C 1.43017 * 113.73637 * 58.66549 * 6 5 3 8 8 C 1.53096 * 109.25997 * 301.33336 * 7 6 5 9 9 N 1.47012 * 109.50848 * 310.23450 * 3 2 1 10 10 C 1.46899 * 111.00277 * 302.33068 * 9 3 2 11 11 C 1.53007 * 109.46846 * 300.11953 * 10 9 3 12 12 O 1.42899 * 109.47372 * 68.59885 * 11 10 9 13 13 C 1.42901 * 114.00119 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46982 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99948 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99624 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99965 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99625 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47484 * 59.99637 * 18 16 14 20 20 H 1.48504 * 109.47167 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47168 * 299.99515 * 18 16 14 22 22 H 4.18855 * 15.02117 * 0.02562 * 4 2 1 23 23 H 1.09001 * 109.50658 * 63.27713 * 5 3 2 24 24 H 1.08996 * 109.54285 * 303.16691 * 5 3 2 25 25 H 1.09003 * 109.50647 * 181.39698 * 7 6 5 26 26 H 1.09001 * 109.53899 * 61.29252 * 7 6 5 27 27 H 1.09002 * 109.50588 * 296.90761 * 8 7 6 28 28 H 1.09001 * 109.53846 * 176.80414 * 8 7 6 29 29 H 1.08994 * 109.47477 * 180.12240 * 10 9 3 30 30 H 1.08995 * 109.47052 * 60.11549 * 10 9 3 31 31 H 1.08996 * 109.47408 * 308.59436 * 11 10 9 32 32 H 1.09005 * 109.46790 * 188.59878 * 11 10 9 33 33 H 1.09000 * 109.46629 * 59.99820 * 13 12 11 34 34 H 1.08997 * 109.47228 * 300.00153 * 13 12 11 35 35 H 0.97000 * 119.99457 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0101 1.0121 0.1807 5 6 3.1574 -0.4921 -1.3562 6 8 4.5856 -0.5607 -1.3252 7 6 5.0985 -1.4241 -0.3069 8 6 4.6067 -0.9407 1.0599 9 7 3.1373 -0.8942 1.0579 10 6 2.6216 -0.4885 2.3722 11 6 3.0794 0.9383 2.6814 12 8 2.4212 1.8512 1.8008 13 6 2.7799 3.2189 2.0073 14 6 2.0312 4.0877 1.0296 15 1 1.3493 3.6401 0.3217 16 6 2.2168 5.4539 1.0389 17 7 3.0468 5.9989 1.9013 18 14 1.2882 6.5308 -0.1725 19 1 -0.1726 6.3657 0.0371 20 1 1.6620 7.9520 0.0412 21 1 1.6376 6.1307 -1.5593 22 1 -1.0500 -0.0012 0.0003 23 1 2.8432 0.2003 -2.1372 24 1 2.7499 -1.4819 -1.5618 25 1 6.1882 -1.4057 -0.3290 26 1 4.7481 -2.4414 -0.4809 27 1 5.0022 0.0557 1.2575 28 1 4.9481 -1.6279 1.8341 29 1 3.0022 -1.1658 3.1367 30 1 1.5324 -0.5266 2.3626 31 1 4.1578 1.0123 2.5415 32 1 2.8292 1.1846 3.7134 33 1 3.8521 3.3404 1.8537 34 1 2.5231 3.5122 3.0252 35 1 3.1770 6.9601 1.9080 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491785023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:27 Heat of formation + Delta-G solvation = -46.763237 kcal Electronic energy + Delta-G solvation = -17748.383645 eV Core-core repulsion = 14940.727397 eV Total energy + Delta-G solvation = -2807.656248 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02210 -38.74334 -36.77816 -34.91925 -34.36323 -31.39719 -31.12506 -29.24984 -27.01921 -25.41155 -24.52215 -23.40107 -21.54910 -19.13223 -18.55168 -17.78929 -17.67900 -17.03892 -16.78183 -16.38217 -16.17573 -15.93208 -15.60136 -14.93801 -14.54412 -13.90319 -13.81452 -13.37071 -13.21778 -12.99782 -12.82169 -12.67645 -12.55248 -12.13430 -12.10554 -11.79909 -11.34911 -11.32593 -11.18194 -10.87197 -10.57316 -10.22685 -9.30076 -8.35606 -6.47679 1.35922 1.40450 1.48757 1.85132 2.07346 2.30740 2.84207 2.93992 2.98303 3.16373 3.60708 3.93169 4.00243 4.12201 4.14880 4.27972 4.28917 4.44635 4.46118 4.60288 4.63979 4.77309 4.82843 4.90587 5.00006 5.07158 5.14391 5.20984 5.50658 5.82953 5.91768 5.95902 6.14098 6.47518 6.76006 6.84961 7.23902 8.76539 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.007073 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.914779 B = 3957.936038 C = 4069.245182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.147 3.853 4 H 0.072 0.928 5 C 0.079 3.921 6 O -0.402 6.402 7 C 0.060 3.940 8 C 0.009 3.991 9 N -0.521 5.521 10 C 0.065 3.935 11 C 0.013 3.987 12 O -0.388 6.388 13 C 0.211 3.789 14 C -0.541 4.541 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.978 3.022 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.266 1.266 22 H 0.244 0.756 23 H 0.097 0.903 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.047 0.953 33 H -0.022 1.022 34 H -0.019 1.019 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -15.561 -2.339 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.182 4.182 3 C 0.039 3.961 4 H 0.090 0.910 5 C 0.002 3.998 6 O -0.321 6.321 7 C -0.016 4.016 8 C -0.119 4.119 9 N -0.245 5.245 10 C -0.063 4.063 11 C -0.065 4.065 12 O -0.308 6.308 13 C 0.136 3.864 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.191 1.191 22 H 0.261 0.739 23 H 0.115 0.885 24 H 0.091 0.909 25 H 0.138 0.862 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.065 0.935 33 H -0.004 1.004 34 H -0.001 1.001 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.839 -15.845 -2.646 16.086 hybrid contribution -0.091 1.824 0.500 1.893 sum 0.748 -14.021 -2.146 14.204 Atomic orbital electron populations 1.25486 0.96540 1.00898 0.99139 1.22606 0.94024 1.00197 1.01366 1.19425 0.86036 0.96961 0.93641 0.91026 1.22617 0.80645 1.01757 0.94748 1.87982 1.20585 1.68332 1.55173 1.22918 1.00191 0.93686 0.84845 1.23025 0.86963 1.01174 1.00738 1.62579 1.09145 1.49029 1.03698 1.22363 1.01318 0.91386 0.91227 1.23346 0.96513 0.92412 0.94266 1.87986 1.68093 1.17165 1.57532 1.19754 0.93373 0.78423 0.94882 1.21267 1.26122 0.91963 1.18515 0.92227 1.25934 0.96195 0.99021 0.97990 1.70064 1.37053 1.12445 1.37438 0.85304 0.78922 0.77005 0.78662 1.18930 1.19888 1.19097 0.73916 0.88538 0.90948 0.86151 0.90684 0.95420 0.86289 0.85972 0.90668 0.94110 0.93510 1.00384 1.00082 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.46 19.25 74.32 1.43 -5.03 16 2 C -0.18 -6.54 10.37 31.13 0.32 -6.22 16 3 C 0.15 5.22 1.84 43.12 0.08 5.30 16 4 H 0.07 3.24 5.48 -2.38 -0.01 3.23 16 5 C 0.08 2.44 6.25 72.01 0.45 2.89 16 6 O -0.40 -12.33 10.83 -148.98 -1.61 -13.94 16 7 C 0.06 1.36 7.01 72.01 0.50 1.87 16 8 C 0.01 0.22 5.30 86.31 0.46 0.67 16 9 N -0.52 -15.48 4.73 -880.68 -4.16 -19.64 16 10 C 0.06 1.92 5.61 86.31 0.48 2.41 16 11 C 0.01 0.49 5.73 71.98 0.41 0.90 16 12 O -0.39 -18.76 6.36 -148.98 -0.95 -19.71 16 13 C 0.21 12.01 5.69 71.24 0.41 12.41 16 14 C -0.54 -32.58 9.43 25.60 0.24 -32.34 16 15 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 16 C 0.01 0.42 5.46 84.65 0.46 0.88 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 18 Si 0.98 45.09 29.54 68.60 2.03 47.11 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H 0.24 5.61 7.80 -4.42 -0.03 5.58 16 23 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 27 H 0.03 0.84 6.35 -2.39 -0.02 0.82 16 28 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.07 2.42 7.04 -2.39 -0.02 2.40 16 31 H 0.04 1.51 6.16 -2.39 -0.01 1.50 16 32 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 33 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 34 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -70.27 290.23 1.90 -68.38 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.06 Total: 10.55 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 5.25 Total: -16.26 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -3.88 Total: -76.12 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -2.56 Total: -33.66 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.27 1.90 -68.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491785023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.615 kcal (2) G-P(sol) polarization free energy of solvation -70.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds