Wall clock time and date at job start Sun Mar 29 2020 22:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00361 * 2 1 4 4 N 1.46500 * 109.47304 * 124.99913 * 3 2 1 5 5 C 1.46499 * 120.00436 * 270.00528 * 4 3 2 6 6 C 1.50701 * 109.46796 * 269.99760 * 5 4 3 7 7 H 1.08001 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99770 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99982 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99970 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47562 * 90.00085 * 10 8 6 12 12 H 1.48504 * 109.46999 * 210.00400 * 10 8 6 13 13 H 1.48501 * 109.46945 * 329.99924 * 10 8 6 14 14 C 1.34777 * 119.99667 * 89.99776 * 4 3 2 15 15 O 1.21512 * 120.00103 * 180.02562 * 14 4 3 16 16 O 1.34635 * 120.00195 * 0.02562 * 14 4 3 17 17 C 1.45205 * 117.00292 * 179.97438 * 16 14 4 18 18 C 1.53779 * 113.61650 * 149.99413 * 17 16 14 19 19 C 1.53787 * 87.07963 * 89.20027 * 18 17 16 20 20 C 1.53779 * 113.69094 * 247.53411 * 17 16 14 21 21 H 1.07996 * 120.00348 * 179.97438 * 1 2 3 22 22 H 1.08001 * 120.00086 * 359.97438 * 1 2 3 23 23 H 1.08010 * 119.99516 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46904 * 4.99924 * 3 2 1 25 25 H 1.09002 * 109.47108 * 245.00410 * 3 2 1 26 26 H 1.09003 * 109.46771 * 29.99219 * 5 4 3 27 27 H 1.08997 * 109.47370 * 149.99616 * 5 4 3 28 28 H 0.97005 * 119.99930 * 179.97438 * 9 8 6 29 29 H 1.09007 * 112.84498 * 18.80113 * 17 16 14 30 30 H 1.08997 * 113.61646 * 334.65659 * 18 17 16 31 31 H 1.08998 * 113.69354 * 203.75967 * 18 17 16 32 32 H 1.09004 * 113.61202 * 139.98084 * 19 18 17 33 33 H 1.08994 * 113.61447 * 270.88515 * 19 18 17 34 34 H 1.09002 * 113.61557 * 156.32242 * 20 17 16 35 35 H 1.09004 * 113.61501 * 25.41662 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8445 3.3434 2.4804 7 1 3.3042 3.8367 1.6368 8 6 2.5187 4.0665 3.6083 9 7 1.9593 3.4657 4.6357 10 14 2.8719 5.8995 3.6769 11 1 1.6991 6.6494 3.1600 12 1 3.1357 6.3005 5.0823 13 1 4.0619 6.2058 2.8431 14 6 4.2497 0.8659 0.9823 15 8 5.0212 0.8877 1.9209 16 8 4.6495 0.3765 -0.2065 17 6 6.0157 -0.1075 -0.2944 18 6 6.2016 -1.2462 -1.3110 19 6 6.4654 -0.1571 -2.3642 20 6 6.9160 0.7455 -1.2036 21 1 -0.5400 -0.9352 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6213 1.4025 -0.9314 26 1 1.4888 1.6965 2.5459 27 1 3.0991 1.3601 3.2259 28 1 1.7305 3.9743 5.4294 29 1 6.4540 -0.3174 0.6814 30 1 5.2934 -1.8203 -1.4946 31 1 7.0673 -1.8769 -1.1088 32 1 7.2668 -0.4071 -3.0595 33 1 5.5631 0.1935 -2.8651 34 1 7.9775 0.6603 -0.9709 35 1 6.5845 1.7794 -1.3004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496538362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:47 Heat of formation + Delta-G solvation = -36.729222 kcal Electronic energy + Delta-G solvation = -17341.030801 eV Core-core repulsion = 14533.809661 eV Total energy + Delta-G solvation = -2807.221140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.05861 -38.16329 -35.85315 -34.86921 -33.15409 -32.05506 -27.69788 -25.74534 -25.64800 -24.90582 -23.09553 -20.47382 -19.71860 -18.84903 -17.40029 -16.56223 -16.13948 -15.49495 -15.24950 -14.93340 -14.49889 -14.40987 -13.62749 -12.99364 -12.63927 -12.48636 -12.41278 -12.14171 -11.60094 -11.31087 -11.08782 -10.95057 -10.87429 -10.80170 -10.60888 -10.23097 -10.16902 -9.86380 -9.69225 -9.56330 -9.11072 -8.44760 -7.79253 -6.05871 -4.10771 2.45939 2.95194 3.30256 3.36723 3.41777 3.64613 4.39094 4.50134 4.63869 4.72695 4.89923 5.08563 5.28572 5.31234 5.48194 5.57819 5.62146 5.74427 5.82462 5.85369 6.02320 6.09035 6.14532 6.21758 6.27509 6.79881 6.87795 6.99022 7.15227 7.43601 7.49346 7.90318 8.19357 8.34807 8.89055 9.17696 9.54615 11.02255 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.007254 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.509341 B = 3859.043531 C = 4672.473549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.142 3.858 4 N -0.573 5.573 5 C 0.260 3.740 6 C -0.530 4.530 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.900 3.100 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.639 3.361 15 O -0.569 6.569 16 O -0.357 6.357 17 C 0.078 3.922 18 C -0.138 4.138 19 C -0.135 4.135 20 C -0.154 4.154 21 H 0.093 0.907 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.264 0.736 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 -7.692 -12.946 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.018 3.982 4 N -0.311 5.311 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.392 3.608 15 O -0.457 6.457 16 O -0.272 6.272 17 C 0.021 3.979 18 C -0.176 4.176 19 C -0.172 4.172 20 C -0.192 4.192 21 H 0.112 0.888 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.465 -7.654 -12.467 15.034 hybrid contribution 0.174 0.995 0.221 1.034 sum 3.639 -6.660 -12.245 14.406 Atomic orbital electron populations 1.23793 0.95784 1.01673 1.01260 1.23416 0.96236 0.99170 0.99218 1.20555 0.92796 0.95188 0.89645 1.47276 1.07478 1.61755 1.14550 1.19371 0.95512 0.93735 0.77094 1.21455 1.40752 0.93227 1.01431 0.92302 1.24921 0.94992 0.98867 0.95218 1.69935 1.41945 1.36220 1.05187 0.86472 0.78641 0.84815 0.77359 1.20572 1.21044 1.19883 1.18190 0.83838 0.77796 0.80958 1.90938 1.53202 1.61235 1.40345 1.86216 1.30916 1.74984 1.35104 1.23378 0.79856 0.94948 0.99669 1.23167 1.02428 0.96293 0.95698 1.22846 1.01493 0.96621 0.96271 1.23347 0.99574 0.99998 0.96258 0.88844 0.88317 0.87821 0.89427 0.90249 0.94168 0.93624 0.92638 0.88588 0.90509 0.88685 0.91534 0.89761 0.88934 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 14.32 29.01 0.42 -2.17 16 2 C -0.16 -2.52 9.85 -36.03 -0.35 -2.87 16 3 C 0.14 2.53 5.85 -5.20 -0.03 2.50 16 4 N -0.57 -12.89 2.44 -182.25 -0.44 -13.34 16 5 C 0.26 6.93 5.16 -5.19 -0.03 6.90 16 6 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 10 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.64 14.55 8.39 54.06 0.45 15.00 16 15 O -0.57 -14.96 15.14 -19.28 -0.29 -15.25 16 16 O -0.36 -6.63 9.00 -40.31 -0.36 -6.99 16 17 C 0.08 1.21 4.31 -25.92 -0.11 1.09 16 18 C -0.14 -1.56 7.92 -25.92 -0.21 -1.77 16 19 C -0.13 -1.45 8.03 -25.91 -0.21 -1.66 16 20 C -0.15 -1.98 7.93 -25.92 -0.21 -2.18 16 21 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 22 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 23 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 24 H 0.09 1.56 7.72 -51.93 -0.40 1.16 16 25 H 0.08 1.30 7.37 -51.93 -0.38 0.91 16 26 H 0.04 1.07 8.07 -51.93 -0.42 0.66 16 27 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.10 1.62 7.07 -51.93 -0.37 1.25 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 303.91 15.07 4.58 4.58 Total: -1.00 -32.17 303.91 -6.79 -38.97 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.29 Total: -0.10 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.69 Total: 1.06 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.29 Total: -39.16 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.65 Total: -22.24 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.17 -6.79 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496538362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.236 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds