Wall clock time and date at job start Sun Mar 29 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 H 1.09001 * 110.73419 * 56.56180 * 16 14 13 18 18 C 1.54984 * 110.83271 * 179.97438 * 16 14 13 19 19 C 1.54285 * 103.74639 * 155.29514 * 18 16 14 20 20 C 1.51447 * 106.85096 * 336.87593 * 19 18 16 21 21 O 1.20759 * 126.33950 * 179.66466 * 20 19 18 22 22 C 1.51844 * 107.31889 * 359.64372 * 20 19 18 23 23 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 24 24 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 25 25 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 27 27 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 28 28 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 29 29 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 30 30 H 1.08998 * 110.57196 * 273.86340 * 18 16 14 31 31 H 1.09001 * 110.56550 * 36.58349 * 18 16 14 32 32 H 1.08997 * 109.98104 * 96.23310 * 19 18 16 33 33 H 1.09004 * 109.97894 * 217.48887 * 19 18 16 34 34 H 1.08995 * 110.44222 * 265.04987 * 22 20 19 35 35 H 1.09006 * 110.44030 * 142.52343 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 1 0.1192 2.6476 -3.4936 18 6 -1.3989 3.9139 -2.5542 19 6 -1.4118 5.0512 -3.5967 20 6 0.0279 5.4728 -3.8043 21 8 0.4201 6.3353 -4.5530 22 6 0.8868 4.6104 -2.8965 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0608 2.9500 29 1 2.2720 2.1231 -1.9978 30 1 -2.1356 3.1522 -2.8093 31 1 -1.5853 4.3058 -1.5543 32 1 -1.8338 4.6915 -4.5351 33 1 -1.9967 5.8919 -3.2235 34 1 1.0800 5.1240 -1.9547 35 1 1.8241 4.3536 -3.3903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570163391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:02 Heat of formation + Delta-G solvation = -95.659897 kcal Electronic energy + Delta-G solvation = -17360.711982 eV Core-core repulsion = 14550.935416 eV Total energy + Delta-G solvation = -2809.776566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09856 -38.79740 -35.99102 -34.85636 -32.41659 -31.04962 -29.20843 -27.39832 -26.63369 -23.25088 -21.98011 -19.89449 -19.46682 -19.27458 -17.42212 -16.37813 -15.92466 -15.44141 -14.97347 -14.87365 -14.34710 -14.00913 -13.69455 -13.29242 -12.83785 -12.71553 -12.16958 -11.73514 -11.64238 -11.43940 -11.24698 -11.17298 -10.99124 -10.84499 -10.78564 -10.35405 -10.18614 -9.68821 -9.64490 -9.08948 -8.95774 -8.51797 -7.85382 -6.14603 -4.24241 1.81603 3.23876 3.29267 3.29725 3.31813 3.88549 4.19873 4.34539 4.38959 4.74861 4.99001 5.13002 5.16832 5.22436 5.37342 5.53599 5.61842 5.79550 5.84127 6.05710 6.25065 6.36642 6.42889 6.63256 7.01034 7.16827 7.33881 7.36705 7.42478 7.59308 7.70634 7.87473 8.15856 8.63959 8.74966 9.10023 9.43377 10.90603 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.006244 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.899769 B = 4483.022722 C = 5216.973082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.706 5.706 14 C 0.509 3.491 15 O -0.545 6.545 16 C -0.115 4.115 17 H 0.101 0.899 18 C -0.100 4.100 19 C -0.184 4.184 20 C 0.373 3.627 21 O -0.452 6.452 22 C -0.172 4.172 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.022 0.978 26 H 0.031 0.969 27 H 0.099 0.901 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 4.420 -9.535 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.293 3.707 15 O -0.424 6.424 16 C -0.136 4.136 17 H 0.119 0.881 18 C -0.138 4.138 19 C -0.222 4.222 20 C 0.249 3.751 21 O -0.325 6.325 22 C -0.210 4.210 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.220 0.780 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.686 4.733 -9.039 12.199 hybrid contribution 1.333 -0.196 -0.204 1.362 sum -5.353 4.537 -9.243 11.605 Atomic orbital electron populations 1.21840 0.98348 0.98028 1.01209 1.21937 0.92610 0.99854 1.02283 1.18784 0.94169 0.89188 0.81051 0.93306 1.21196 0.90746 1.39151 1.06289 0.92160 1.24882 0.98569 0.94787 0.95387 1.69886 1.35218 1.37513 1.09336 0.86526 0.84896 0.78323 0.77467 1.20199 1.21125 1.20167 1.46518 1.14571 1.55707 1.18534 1.20029 0.82836 0.79339 0.88526 1.90671 1.51429 1.59983 1.40346 1.22259 0.96675 0.96429 0.98258 0.88050 1.22169 0.95221 0.96608 0.99793 1.22712 0.96799 1.00934 1.01749 1.24988 0.92527 0.79450 0.78163 1.90414 1.80907 1.27980 1.33216 1.22861 0.99854 0.96310 1.02011 0.93157 0.94273 0.95892 0.95059 0.88319 0.92497 0.77975 0.90302 0.89177 0.88418 0.88282 0.87068 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.28 11.30 55.43 0.63 -23.65 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -13.57 5.02 -54.93 -0.28 -13.84 16 14 C 0.51 9.02 5.71 -10.98 -0.06 8.96 16 15 O -0.55 -11.62 12.85 5.56 0.07 -11.55 16 16 C -0.11 -1.43 3.32 -89.73 -0.30 -1.73 16 17 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 18 C -0.10 -1.11 5.97 -25.01 -0.15 -1.26 16 19 C -0.18 -1.72 6.69 -26.84 -0.18 -1.90 16 20 C 0.37 4.39 7.88 -28.10 -0.22 4.17 16 21 O -0.45 -6.74 17.99 6.00 0.11 -6.63 16 22 C -0.17 -2.01 6.16 -26.32 -0.16 -2.17 16 23 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 24 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 6.48 8.54 -40.82 -0.35 6.13 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.15 7.41 -51.93 -0.38 0.76 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.38 8.04 -51.93 -0.42 0.97 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -29.89 288.03 -6.66 -36.55 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.05 Total: 5.25 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.45 Total: -5.72 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.35 Total: -37.49 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.89 -6.66 -36.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570163391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.111 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds