Wall clock time and date at job start Sun Mar 29 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 H 1.09001 * 110.73419 * 56.56180 * 16 14 13 18 18 C 1.54984 * 110.83271 * 179.97438 * 16 14 13 19 19 C 1.54285 * 103.74639 * 155.29514 * 18 16 14 20 20 C 1.51447 * 106.85096 * 336.87593 * 19 18 16 21 21 O 1.20759 * 126.33950 * 179.66466 * 20 19 18 22 22 C 1.51844 * 107.31889 * 359.64372 * 20 19 18 23 23 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 24 24 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 25 25 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 27 27 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 28 28 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 29 29 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 30 30 H 1.08998 * 110.57196 * 273.86340 * 18 16 14 31 31 H 1.09001 * 110.56550 * 36.58349 * 18 16 14 32 32 H 1.08997 * 109.98104 * 96.23310 * 19 18 16 33 33 H 1.09004 * 109.97894 * 217.48887 * 19 18 16 34 34 H 1.08995 * 110.44222 * 265.04987 * 22 20 19 35 35 H 1.09006 * 110.44030 * 142.52343 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 1 0.1192 2.6476 -3.4936 18 6 -1.3989 3.9139 -2.5542 19 6 -1.4118 5.0512 -3.5967 20 6 0.0279 5.4728 -3.8043 21 8 0.4201 6.3353 -4.5530 22 6 0.8868 4.6104 -2.8965 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0608 2.9500 29 1 2.2720 2.1231 -1.9978 30 1 -2.1356 3.1522 -2.8093 31 1 -1.5853 4.3058 -1.5543 32 1 -1.8338 4.6915 -4.5351 33 1 -1.9967 5.8919 -3.2235 34 1 1.0800 5.1240 -1.9547 35 1 1.8241 4.3536 -3.3903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570163391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:02 Heat of formation + Delta-G solvation = -115.219078 kcal Electronic energy + Delta-G solvation = -17361.560132 eV Core-core repulsion = 14550.935416 eV Total energy + Delta-G solvation = -2810.624716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.27335 -40.10939 -37.32171 -36.40092 -34.26155 -32.79468 -30.27899 -28.89802 -27.98618 -25.06354 -23.29883 -21.52692 -20.81521 -20.38450 -18.95069 -17.68162 -17.27773 -17.06506 -16.45158 -16.13236 -15.78739 -15.39498 -14.86673 -14.58238 -14.37538 -14.10573 -13.72264 -13.34123 -13.15569 -12.92997 -12.75582 -12.64218 -12.43065 -12.19261 -12.14294 -11.96111 -11.67932 -11.54372 -11.03009 -10.76188 -10.52579 -10.34787 -9.56350 -8.14573 -6.31418 0.88776 1.45637 1.46622 1.54300 1.89315 2.37302 2.66452 3.14787 3.21832 3.41626 3.77305 4.02065 4.25533 4.32959 4.40448 4.47375 4.53274 4.61807 4.74200 4.80758 4.88816 5.01563 5.11060 5.20077 5.29904 5.35382 5.47767 5.59553 5.67474 5.83898 5.96750 6.20799 6.44804 6.77621 7.06222 7.36324 7.65574 8.90277 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.006244 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.899769 B = 4483.022722 C = 5216.973082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.584 6.584 16 C -0.103 4.103 17 H 0.133 0.867 18 C -0.097 4.097 19 C -0.170 4.170 20 C 0.381 3.619 21 O -0.485 6.485 22 C -0.172 4.172 23 H 0.025 0.975 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.403 0.597 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 4.553 -11.658 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.353 5.353 14 C 0.292 3.708 15 O -0.465 6.465 16 C -0.124 4.124 17 H 0.150 0.850 18 C -0.135 4.135 19 C -0.208 4.208 20 C 0.259 3.741 21 O -0.360 6.360 22 C -0.210 4.210 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.237 0.763 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.672 4.875 -11.198 13.917 hybrid contribution 1.289 -0.221 0.493 1.398 sum -5.383 4.653 -10.705 12.854 Atomic orbital electron populations 1.21679 0.96786 0.99114 1.00444 1.21786 0.93931 0.99227 1.01174 1.18331 0.93388 0.89202 0.81683 0.98382 1.21575 0.91695 1.38769 1.06554 0.91119 1.25730 1.03007 0.94504 0.95141 1.70043 1.37000 1.38419 1.09853 0.85490 0.79527 0.78364 0.77505 1.19808 1.21317 1.18993 1.46292 1.15749 1.55913 1.17389 1.20915 0.81588 0.78339 0.89912 1.90662 1.52360 1.61109 1.42322 1.22231 0.97639 0.96762 0.95781 0.84952 1.22158 0.94492 0.97504 0.99382 1.22652 0.95199 1.00614 1.02290 1.25133 0.93601 0.78399 0.76943 1.90419 1.81583 1.29398 1.34638 1.22854 1.00495 0.95888 1.01749 0.95625 0.93243 0.93773 0.94086 0.91311 0.92683 0.76260 0.88855 0.91276 0.85791 0.86848 0.88206 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.51 71.98 0.61 -4.67 16 2 C -0.12 -5.82 5.45 30.60 0.17 -5.66 16 3 C 0.28 13.66 2.24 44.25 0.10 13.76 16 4 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 5 C -0.55 -28.18 8.73 25.60 0.22 -27.96 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -51.65 11.30 21.45 0.24 -51.41 16 9 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 13 N -0.70 -26.71 5.02 -446.09 -2.24 -28.95 16 14 C 0.51 17.56 5.71 87.66 0.50 18.06 16 15 O -0.58 -25.14 12.85 -3.02 -0.04 -25.18 16 16 C -0.10 -2.31 3.32 -10.21 -0.03 -2.35 16 17 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 18 C -0.10 -1.91 5.97 31.71 0.19 -1.72 16 19 C -0.17 -2.60 6.69 30.52 0.20 -2.40 16 20 C 0.38 8.04 7.88 29.71 0.23 8.28 16 21 O -0.48 -13.55 17.99 -1.45 -0.03 -13.58 16 22 C -0.17 -3.67 6.16 30.86 0.19 -3.48 16 23 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 24 H 0.05 1.99 5.64 -2.39 -0.01 1.98 16 25 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 3.72 5.95 -2.39 -0.01 3.71 16 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.40 12.83 8.54 -92.71 -0.79 12.04 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.68 7.41 -2.39 -0.02 1.66 16 32 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.10 2.41 8.04 -2.39 -0.02 2.39 16 35 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -66.22 288.03 3.10 -63.12 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.30 Total: 19.29 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 2.83 Total: -6.82 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.00 Total: -80.36 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.06 Total: -38.76 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -66.22 3.10 -63.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570163391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.100 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds