Wall clock time and date at job start Sun Mar 29 2020 23:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47014 * 2 1 4 4 N 1.46507 * 109.46696 * 179.97438 * 3 2 1 5 5 C 1.37095 * 119.99903 * 269.99734 * 4 3 2 6 6 H 1.08001 * 120.00412 * 141.15993 * 5 4 3 7 7 C 1.38953 * 120.00186 * 321.16395 * 5 4 3 8 8 N 1.31406 * 119.99923 * 338.54130 * 7 5 4 9 9 Si 1.86805 * 119.99923 * 158.54523 * 7 5 4 10 10 H 1.48494 * 109.47070 * 89.99915 * 9 7 5 11 11 H 1.48505 * 109.46790 * 209.99770 * 9 7 5 12 12 H 1.48492 * 109.47150 * 329.99624 * 9 7 5 13 13 C 1.34772 * 119.99795 * 90.00364 * 4 3 2 14 14 O 1.21289 * 120.00379 * 4.80921 * 13 4 3 15 15 C 1.50703 * 119.99666 * 184.53571 * 13 4 3 16 16 H 1.08999 * 110.50996 * 328.43138 * 15 13 4 17 17 C 1.54987 * 110.56921 * 205.68288 * 15 13 4 18 18 C 1.54888 * 102.33163 * 204.34864 * 17 15 13 19 19 C 1.51842 * 104.43608 * 37.62382 * 18 17 15 20 20 O 1.20764 * 126.34294 * 156.23132 * 19 18 17 21 21 C 1.51447 * 107.31340 * 336.20804 * 19 18 17 22 22 H 1.08997 * 109.46621 * 299.99812 * 1 2 3 23 23 H 1.08998 * 109.46945 * 60.00210 * 1 2 3 24 24 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47296 * 239.99891 * 2 1 3 26 26 H 1.08996 * 109.47015 * 120.00325 * 2 1 3 27 27 H 1.09000 * 109.46880 * 60.00274 * 3 2 1 28 28 H 1.08998 * 109.47093 * 299.99699 * 3 2 1 29 29 H 0.96998 * 120.00296 * 185.04707 * 8 7 5 30 30 H 1.09008 * 110.83239 * 322.55431 * 17 15 13 31 31 H 1.08995 * 110.83632 * 86.13331 * 17 15 13 32 32 H 1.09003 * 110.44034 * 156.35644 * 18 17 15 33 33 H 1.08998 * 110.44135 * 278.88154 * 18 17 15 34 34 H 1.08999 * 109.98269 * 241.00700 * 21 19 18 35 35 H 1.09006 * 109.98488 * 119.71144 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1900 1.4426 1.1882 6 1 5.0909 0.8560 1.2922 7 6 3.7253 2.1975 2.2582 8 7 2.9161 3.2107 2.0452 9 14 4.2508 1.7719 3.9996 10 1 5.4923 2.5135 4.3371 11 1 3.1737 2.1521 4.9485 12 1 4.5041 0.3120 4.0974 13 6 4.1794 1.4423 -1.1663 14 8 3.5766 1.5303 -2.2151 15 6 5.6829 1.3390 -1.1676 16 1 6.0989 1.8113 -0.2778 17 6 6.2716 1.9802 -2.4500 18 6 7.6317 1.2523 -2.5894 19 6 7.3433 -0.1747 -2.1578 20 8 7.9698 -1.1580 -2.4724 21 6 6.1248 -0.1362 -1.2592 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 2.6499 3.7821 2.7824 30 1 5.6344 1.7794 -3.3114 31 1 6.4174 3.0519 -2.3157 32 1 7.9715 1.2754 -3.6248 33 1 8.3750 1.7056 -1.9336 34 1 6.3810 -0.5106 -0.2680 35 1 5.3251 -0.7387 -1.6900 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571212769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:26 Heat of formation + Delta-G solvation = -90.078051 kcal Electronic energy + Delta-G solvation = -17653.557799 eV Core-core repulsion = 14844.023280 eV Total energy + Delta-G solvation = -2809.534519 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70628 -38.40682 -35.74690 -34.72199 -32.83856 -31.32704 -28.92812 -26.96519 -25.70387 -24.48404 -21.60762 -20.30095 -19.24316 -18.92240 -17.02130 -16.34836 -15.55086 -15.20909 -14.75283 -14.40574 -14.19559 -13.87403 -13.65109 -13.11116 -12.82410 -12.60947 -12.31526 -11.69639 -11.45138 -11.33946 -11.32174 -11.13374 -10.97779 -10.82339 -10.55144 -10.52439 -10.35561 -10.16618 -9.76270 -9.33538 -9.13174 -8.41940 -7.50302 -6.44487 -4.13481 2.14633 3.04903 3.16632 3.19854 3.76722 4.04194 4.38457 4.72287 4.83248 4.90273 5.21827 5.44531 5.62279 5.68422 5.75307 5.83046 5.87659 5.88278 6.03947 6.14242 6.25467 6.33207 6.47448 6.49837 6.55510 6.64119 6.76207 6.77152 7.08327 7.30729 7.43738 7.69659 7.92822 8.30659 9.01410 9.47013 9.90678 10.58007 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019531 B = 0.008853 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.294960 B = 3162.037529 C = 3889.701378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.114 3.886 4 N -0.435 5.435 5 C -0.346 4.346 6 H 0.088 0.912 7 C 0.048 3.952 8 N -0.856 5.856 9 Si 0.910 3.090 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.478 3.522 14 O -0.605 6.605 15 C -0.095 4.095 16 H 0.107 0.893 17 C -0.104 4.104 18 C -0.182 4.182 19 C 0.375 3.625 20 O -0.461 6.461 21 C -0.166 4.166 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.271 0.729 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -2.163 -1.427 3.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.010 4.010 4 N -0.152 5.152 5 C -0.474 4.474 6 H 0.106 0.894 7 C -0.159 4.159 8 N -0.492 5.492 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.267 3.733 14 O -0.491 6.491 15 C -0.116 4.116 16 H 0.125 0.875 17 C -0.142 4.142 18 C -0.219 4.219 19 C 0.251 3.749 20 O -0.335 6.335 21 C -0.204 4.204 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.881 -2.514 -1.946 4.290 hybrid contribution 0.165 -0.017 1.179 1.190 sum 3.046 -2.531 -0.767 4.034 Atomic orbital electron populations 1.21662 0.96571 1.00475 1.01426 1.21831 0.94725 0.99401 1.01237 1.21400 0.81718 0.94512 1.03351 1.43425 1.04600 1.62679 1.04515 1.19330 1.10853 1.28739 0.88435 0.89389 1.25390 0.96350 0.93886 1.00244 1.69884 1.33472 1.12940 1.32879 0.86199 0.78433 0.79382 0.82330 1.20181 1.20701 1.19235 1.20139 0.88620 0.80439 0.84150 1.90511 1.70193 1.56224 1.32176 1.21813 0.95136 0.94663 1.00035 0.87451 1.22377 0.93674 0.99534 0.98581 1.22925 1.00203 0.95580 1.03239 1.25086 0.83077 0.89955 0.76747 1.90373 1.51541 1.39918 1.51710 1.22489 0.97978 0.98528 1.01437 0.92962 0.93128 0.93607 0.93169 0.92205 0.88187 0.92637 0.91879 0.89593 0.90516 0.89370 0.87943 0.88041 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.13 -2.65 6.26 -26.73 -0.17 -2.82 16 3 C 0.11 2.64 5.04 -4.04 -0.02 2.62 16 4 N -0.44 -10.45 2.51 -114.81 -0.29 -10.74 16 5 C -0.35 -8.25 8.19 -14.93 -0.12 -8.37 16 6 H 0.09 1.98 7.12 -52.49 -0.37 1.60 16 7 C 0.05 1.16 4.94 -17.47 -0.09 1.07 16 8 N -0.86 -21.80 11.56 55.50 0.64 -21.16 16 9 Si 0.91 18.58 29.61 -169.99 -5.03 13.55 16 10 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 C 0.48 11.01 6.65 -10.99 -0.07 10.94 16 14 O -0.60 -15.33 15.39 5.55 0.09 -15.24 16 15 C -0.10 -1.75 2.46 -90.06 -0.22 -1.97 16 16 H 0.11 1.98 6.82 -51.93 -0.35 1.62 16 17 C -0.10 -1.64 6.24 -24.69 -0.15 -1.79 16 18 C -0.18 -2.40 6.72 -26.32 -0.18 -2.58 16 19 C 0.37 5.92 7.88 -28.10 -0.22 5.70 16 20 O -0.46 -8.40 17.99 6.00 0.11 -8.30 16 21 C -0.17 -2.76 6.26 -26.85 -0.17 -2.93 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.10 2.47 5.62 -51.93 -0.29 2.18 16 28 H 0.06 1.35 7.36 -51.93 -0.38 0.97 16 29 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 30 H 0.09 1.49 7.25 -51.92 -0.38 1.11 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.10 1.71 7.82 -51.93 -0.41 1.31 16 LS Contribution 292.53 15.07 4.41 4.41 Total: -1.00 -28.34 292.53 -6.25 -34.59 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.12 Total: 5.02 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.04 Total: -2.13 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.35 Total: -31.89 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.19 Total: -23.54 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.34 -6.25 -34.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571212769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.491 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds