Wall clock time and date at job start Sun Mar 29 2020 22:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50693 * 120.00533 * 2 1 4 4 H 1.09007 * 109.47037 * 244.99709 * 3 2 1 5 5 O 1.42905 * 109.46968 * 4.99411 * 3 2 1 6 6 C 1.50700 * 109.47549 * 124.99598 * 3 2 1 7 7 O 1.21283 * 119.99803 * 244.99963 * 6 3 2 8 8 N 1.34777 * 119.99675 * 65.27839 * 6 3 2 9 9 C 1.46921 * 120.63392 * 359.43977 * 8 6 3 10 10 C 1.52760 * 109.00994 * 233.58899 * 9 8 6 11 11 C 1.53036 * 109.38235 * 305.58739 * 10 9 8 12 12 C 1.53035 * 109.53955 * 61.24292 * 11 10 9 13 13 H 1.08997 * 109.49664 * 58.58032 * 12 11 10 14 14 C 1.50701 * 109.50156 * 178.68122 * 12 11 10 15 15 H 1.07998 * 119.99570 * 359.84031 * 14 12 11 16 16 C 1.37870 * 120.00380 * 179.83725 * 14 12 11 17 17 N 1.31526 * 119.99854 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00268 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47311 * 90.00053 * 18 16 14 20 20 H 1.48499 * 109.47461 * 210.00062 * 18 16 14 21 21 H 1.48500 * 109.47050 * 330.00097 * 18 16 14 22 22 C 1.46924 * 120.62813 * 179.72946 * 8 6 3 23 23 H 1.08000 * 119.99799 * 0.02562 * 1 2 3 24 24 H 1.08002 * 120.00641 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99362 * 179.97438 * 2 1 3 26 26 H 0.96701 * 113.99714 * 60.00032 * 5 3 2 27 27 H 1.09004 * 109.58490 * 353.42409 * 9 8 6 28 28 H 1.09002 * 109.58518 * 113.84767 * 9 8 6 29 29 H 1.09005 * 109.56000 * 185.55371 * 10 9 8 30 30 H 1.08994 * 109.38732 * 65.51586 * 10 9 8 31 31 H 1.09002 * 109.46377 * 301.22063 * 11 10 9 32 32 H 1.09001 * 109.45993 * 181.26248 * 11 10 9 33 33 H 0.97001 * 119.99828 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.58353 * 246.15683 * 22 8 6 35 35 H 1.09008 * 109.58903 * 6.57099 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 2.6214 1.4024 -0.9314 5 8 1.1394 2.3887 0.1173 6 6 3.0204 1.3326 1.1639 7 8 2.8659 2.1385 2.0569 8 7 4.0511 0.4654 1.2095 9 6 4.2478 -0.5208 0.1383 10 6 4.3439 -1.9144 0.7565 11 6 5.4384 -1.9212 1.8262 12 6 5.0804 -0.9246 2.9310 13 1 4.1179 -1.1938 3.3659 14 6 6.1424 -0.9554 3.9997 15 1 6.9871 -1.6213 3.9025 16 6 6.0357 -0.1336 5.1016 17 7 5.0073 0.6777 5.2197 18 14 7.3525 -0.1713 6.4259 19 1 8.4108 0.8182 6.1001 20 1 6.7450 0.1676 7.7379 21 1 7.9486 -1.5298 6.4927 22 6 4.9958 0.4840 2.3347 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8498 -0.9354 0.0004 26 1 0.6075 2.3663 0.9246 27 1 3.4036 -0.4854 -0.5503 28 1 5.1697 -0.2979 -0.3987 29 1 4.5879 -2.6413 -0.0183 30 1 3.3885 -2.1749 1.2118 31 1 6.3890 -1.6370 1.3749 32 1 5.5233 -2.9208 2.2524 33 1 4.9324 1.2562 5.9948 34 1 5.9800 0.7906 1.9804 35 1 4.6451 1.1822 3.0948 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:21 Heat of formation + Delta-G solvation = -67.989016 kcal Electronic energy + Delta-G solvation = -17882.199867 eV Core-core repulsion = 15073.623200 eV Total energy + Delta-G solvation = -2808.576667 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91980 -37.41835 -36.21692 -33.63435 -32.60257 -31.75932 -29.91877 -27.54016 -25.07234 -24.14385 -21.86098 -20.24363 -20.06648 -18.47136 -17.35958 -16.52721 -16.14386 -16.04991 -14.68951 -14.49791 -14.15678 -13.82496 -13.70551 -12.92108 -12.82047 -12.55449 -12.36620 -12.06933 -11.92872 -11.32863 -11.01431 -10.92739 -10.65765 -10.54300 -10.39134 -10.27307 -9.92770 -9.83864 -9.17495 -9.12285 -8.71489 -8.45721 -7.78979 -6.01742 -4.10841 2.11892 3.16565 3.29577 3.37019 3.39067 3.66910 4.38851 4.41273 4.74159 4.96261 5.14588 5.26518 5.28863 5.38730 5.45340 5.62497 5.80380 5.94128 6.10648 6.26136 6.46782 6.55988 6.60733 6.63166 6.81188 6.93552 7.10199 7.24137 7.55224 7.62457 7.84155 7.97037 8.20764 8.36087 8.78113 8.93610 9.55067 11.03498 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032104 B = 0.007349 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.962534 B = 3809.304861 C = 4330.268968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.195 4.195 3 C 0.118 3.882 4 H 0.127 0.873 5 O -0.540 6.540 6 C 0.482 3.518 7 O -0.530 6.530 8 N -0.600 5.600 9 C 0.098 3.902 10 C -0.135 4.135 11 C -0.111 4.111 12 C 0.041 3.959 13 H 0.028 0.972 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.881 5.881 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.110 3.890 23 H 0.106 0.894 24 H 0.103 0.897 25 H 0.128 0.872 26 H 0.383 0.617 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 -3.181 -11.552 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.213 4.213 3 C 0.055 3.945 4 H 0.144 0.856 5 O -0.346 6.346 6 C 0.268 3.732 7 O -0.407 6.407 8 N -0.334 5.334 9 C -0.025 4.025 10 C -0.173 4.173 11 C -0.148 4.148 12 C 0.022 3.978 13 H 0.046 0.954 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.518 5.518 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.010 4.010 23 H 0.124 0.876 24 H 0.121 0.879 25 H 0.145 0.855 26 H 0.233 0.767 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.276 -2.421 -11.505 12.886 hybrid contribution 0.579 -0.337 1.240 1.410 sum -4.697 -2.758 -10.265 11.620 Atomic orbital electron populations 1.23862 0.95891 1.02502 0.98825 1.23664 0.97006 0.98500 1.02129 1.20825 0.89746 0.85745 0.98166 0.85592 1.86519 1.53815 1.47677 1.46540 1.21124 0.82360 0.81660 0.88031 1.90726 1.73209 1.38126 1.38672 1.48521 1.28208 1.32577 1.24106 1.21778 1.01345 0.89489 0.89920 1.21883 1.00916 0.95324 0.99170 1.21623 0.96408 1.00561 0.96251 1.18959 0.97559 0.89631 0.91691 0.95380 1.21075 1.07921 1.22832 1.04208 0.92344 1.25062 0.95610 0.95312 0.98085 1.69890 1.28650 1.23761 1.29499 0.86579 0.81790 0.78318 0.81241 1.20620 1.21194 1.19925 1.22323 0.89128 1.03132 0.86395 0.87605 0.87913 0.85484 0.76726 0.90495 0.91869 0.92049 0.92167 0.93112 0.92962 0.92631 0.93927 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 13.91 29.02 0.40 -1.53 16 2 C -0.19 -2.46 8.43 -36.03 -0.30 -2.77 16 3 C 0.12 1.75 3.12 -29.04 -0.09 1.66 16 4 H 0.13 1.61 7.70 -51.92 -0.40 1.21 16 5 O -0.54 -8.21 11.84 -55.09 -0.65 -8.86 16 6 C 0.48 9.60 7.09 -10.98 -0.08 9.52 16 7 O -0.53 -13.03 15.74 -14.31 -0.23 -13.25 16 8 N -0.60 -11.78 2.98 -173.03 -0.52 -12.30 16 9 C 0.10 1.45 5.57 -3.94 -0.02 1.43 16 10 C -0.13 -2.05 5.91 -26.84 -0.16 -2.21 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 12 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 13 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 14 C -0.52 -14.05 8.56 -34.44 -0.29 -14.34 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.88 -25.69 11.39 55.43 0.63 -25.06 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.11 2.66 5.40 -3.71 -0.02 2.64 16 23 H 0.11 1.12 6.56 -52.49 -0.34 0.78 16 24 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 25 H 0.13 1.52 5.75 -52.48 -0.30 1.22 16 26 H 0.38 5.24 8.03 45.56 0.37 5.61 16 27 H 0.08 0.91 4.23 -51.93 -0.22 0.69 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.94 7.89 -51.93 -0.41 0.53 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.12 3.48 5.12 -51.92 -0.27 3.21 16 LS Contribution 281.71 15.07 4.25 4.25 Total: -1.00 -31.66 281.71 -6.61 -38.28 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.08 Total: 6.22 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.00 Total: -5.47 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.12 Total: -37.36 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.88 Total: -22.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.66 -6.61 -38.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.713 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds