Wall clock time and date at job start Sun Mar 29 2020 23:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 N 1.46494 * 109.47170 * 124.99896 * 3 2 1 5 5 C 1.46502 * 120.00110 * 269.99523 * 4 3 2 6 6 C 1.50700 * 109.46802 * 90.00169 * 5 4 3 7 7 H 1.08002 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99893 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99742 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00038 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47478 * 89.99746 * 10 8 6 12 12 H 1.48503 * 109.47219 * 210.00033 * 10 8 6 13 13 H 1.48503 * 109.47167 * 329.99747 * 10 8 6 14 14 C 1.34781 * 120.00107 * 90.00259 * 4 3 2 15 15 O 1.21280 * 119.99822 * 179.97438 * 14 4 3 16 16 C 1.50703 * 119.99819 * 359.97438 * 14 4 3 17 17 H 1.09007 * 112.85008 * 311.19908 * 16 14 4 18 18 C 1.53777 * 113.61364 * 82.50593 * 16 14 4 19 19 C 1.53776 * 87.08111 * 139.97841 * 18 16 14 20 20 H 1.09008 * 113.69068 * 89.12823 * 19 18 16 21 21 O 1.42894 * 113.61806 * 220.01524 * 19 18 16 22 22 C 1.53775 * 113.61251 * 180.02562 * 16 14 4 23 23 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 24 24 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 25 25 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 26 26 H 1.09003 * 109.46806 * 245.00403 * 3 2 1 27 27 H 1.08997 * 109.46799 * 4.99500 * 3 2 1 28 28 H 1.08999 * 109.47181 * 209.99883 * 5 4 3 29 29 H 1.08996 * 109.47070 * 330.00524 * 5 4 3 30 30 H 0.97005 * 119.99886 * 180.02562 * 9 8 6 31 31 H 1.09003 * 113.61742 * 254.52777 * 18 16 14 32 32 H 1.09001 * 113.61469 * 25.43199 * 18 16 14 33 33 H 0.96702 * 114.00687 * 277.49801 * 21 19 18 34 34 H 1.09004 * 113.61479 * 334.56839 * 22 16 14 35 35 H 1.08998 * 113.61375 * 105.38677 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8650 2.4248 6 6 1.9752 0.7519 3.2563 7 1 1.9329 -0.2522 2.8610 8 6 1.4953 1.0156 4.5217 9 7 0.9864 0.0441 5.2475 10 14 1.5679 2.7525 5.2051 11 1 0.3207 3.4764 4.8509 12 1 1.7059 2.6977 6.6827 13 1 2.7351 3.4642 4.6251 14 6 4.2498 0.8662 0.9824 15 8 5.0200 0.8888 1.9189 16 6 4.6970 0.3173 -0.3480 17 1 3.9929 -0.4013 -0.7677 18 6 5.1406 1.4017 -1.3440 19 6 6.2759 0.4491 -1.7546 20 1 6.0051 -0.2333 -2.5603 21 8 7.5228 1.1089 -1.9819 22 6 6.1543 -0.1735 -0.3534 23 1 -0.5400 -0.9353 -0.0044 24 1 -0.5399 0.9354 0.0045 25 1 1.8500 -0.9354 -0.0045 26 1 2.6213 1.4026 -0.9314 27 1 1.3587 2.1316 0.0895 28 1 3.4133 2.2977 2.9453 29 1 1.8032 2.6340 2.2652 30 1 0.6484 0.2296 6.1376 31 1 4.4176 1.5873 -2.1383 32 1 5.4901 2.3169 -0.8661 33 1 7.6052 1.5023 -2.8615 34 1 6.7810 0.3109 0.3955 35 1 6.2493 -1.2593 -0.3466 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602152166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:34 Heat of formation + Delta-G solvation = -66.394015 kcal Electronic energy + Delta-G solvation = -17450.780399 eV Core-core repulsion = 14642.272897 eV Total energy + Delta-G solvation = -2808.507502 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44744 -39.17276 -37.25284 -35.78788 -34.91429 -33.73579 -30.52843 -27.24247 -26.76642 -26.53127 -24.01927 -21.41163 -20.65957 -19.94628 -19.05486 -18.64272 -17.68990 -17.21013 -16.43251 -16.40870 -15.72889 -15.43763 -15.00695 -14.58692 -14.32442 -14.10490 -13.66640 -13.59597 -13.29281 -13.07020 -12.84340 -12.60003 -12.36565 -12.24346 -11.98944 -11.96315 -11.70034 -11.47705 -10.87999 -10.81016 -10.47534 -10.20384 -9.44930 -8.31956 -6.35145 1.29454 1.33613 1.39702 1.44922 1.79398 2.31199 2.40406 3.01681 3.35361 3.45252 3.62342 3.82609 3.92952 4.01050 4.17973 4.32022 4.45202 4.55170 4.73290 4.75282 4.78809 4.83083 4.94413 4.99365 5.08357 5.11804 5.36760 5.46394 5.58428 5.78383 5.97997 6.27088 6.65446 6.69404 7.01642 7.23737 7.42243 8.84947 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.007153 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.341412 B = 3913.626912 C = 4460.952206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.177 4.177 3 C 0.138 3.862 4 N -0.594 5.594 5 C 0.222 3.778 6 C -0.523 4.523 7 H 0.032 0.968 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.943 3.057 11 H -0.250 1.250 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.508 3.492 15 O -0.598 6.598 16 C -0.132 4.132 17 H 0.139 0.861 18 C -0.140 4.140 19 C 0.096 3.904 20 H 0.125 0.875 21 O -0.581 6.581 22 C -0.126 4.126 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.015 0.985 29 H 0.047 0.953 30 H 0.267 0.733 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 3.860 -20.226 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C 0.016 3.984 4 N -0.324 5.324 5 C 0.099 3.901 6 C -0.561 4.561 7 H 0.050 0.950 8 C -0.188 4.188 9 N -0.587 5.587 10 Si 0.766 3.234 11 H -0.174 1.174 12 H -0.209 1.209 13 H -0.183 1.183 14 C 0.297 3.703 15 O -0.479 6.479 16 C -0.153 4.153 17 H 0.157 0.843 18 C -0.178 4.178 19 C 0.038 3.962 20 H 0.143 0.857 21 O -0.389 6.389 22 C -0.164 4.164 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.248 0.752 34 H 0.082 0.918 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.965 3.675 -18.976 19.731 hybrid contribution -0.343 0.277 0.887 0.991 sum 3.622 3.951 -18.089 18.866 Atomic orbital electron populations 1.23883 0.95734 1.02396 0.99137 1.23225 0.96724 0.98604 1.01055 1.20931 0.92400 0.96032 0.89026 1.48011 1.11373 1.60718 1.12272 1.19353 0.94551 0.93958 0.82190 1.21496 1.38947 0.95382 1.00300 0.94973 1.25809 0.94368 1.01716 0.96894 1.70051 1.42667 1.34465 1.11485 0.85779 0.79997 0.79832 0.77773 1.17443 1.20918 1.18319 1.21191 0.81303 0.77075 0.90703 1.90626 1.55008 1.57966 1.44331 1.22613 0.98647 1.01477 0.92537 0.84345 1.23582 0.99587 0.96654 0.97984 1.23300 0.82812 0.93752 0.96354 0.85717 1.86527 1.36854 1.75196 1.40353 1.23007 0.94105 1.01554 0.97687 0.88281 0.87582 0.88464 0.86469 0.89234 0.96657 0.93524 0.92455 0.86565 0.91080 0.75165 0.91850 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 14.32 67.78 0.97 -4.00 16 2 C -0.18 -5.38 9.58 25.64 0.25 -5.13 16 3 C 0.14 3.97 5.59 85.63 0.48 4.45 16 4 N -0.59 -24.21 2.44 -830.51 -2.03 -26.24 16 5 C 0.22 11.02 4.27 85.63 0.37 11.38 16 6 C -0.52 -31.03 9.94 25.60 0.25 -30.78 16 7 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 8 C 0.01 0.58 5.47 84.66 0.46 1.04 16 9 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 10 Si 0.94 45.28 27.47 68.60 1.88 47.17 16 11 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 14 C 0.51 21.09 7.20 87.66 0.63 21.72 16 15 O -0.60 -31.68 15.48 -3.03 -0.05 -31.73 16 16 C -0.13 -3.62 2.79 -11.02 -0.03 -3.65 16 17 H 0.14 3.06 7.39 -2.38 -0.02 3.04 16 18 C -0.14 -2.79 6.74 31.12 0.21 -2.58 16 19 C 0.10 1.78 5.21 31.13 0.16 1.94 16 20 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 21 O -0.58 -11.62 13.67 -148.98 -2.04 -13.65 16 22 C -0.13 -3.50 7.24 31.13 0.23 -3.27 16 23 H 0.10 2.67 8.06 -2.91 -0.02 2.65 16 24 H 0.11 2.75 7.84 -2.91 -0.02 2.72 16 25 H 0.10 3.03 7.85 -2.91 -0.02 3.01 16 26 H 0.12 2.36 5.79 -2.39 -0.01 2.35 16 27 H 0.09 2.38 7.54 -2.39 -0.02 2.37 16 28 H 0.02 0.84 6.48 -2.39 -0.02 0.82 16 29 H 0.05 2.09 7.32 -2.39 -0.02 2.08 16 30 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 31 H 0.12 1.39 7.68 -2.39 -0.02 1.38 16 32 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 33 H 0.40 3.54 9.12 -74.06 -0.68 2.87 16 34 H 0.06 2.29 7.43 -2.38 -0.02 2.27 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -82.48 295.36 2.40 -80.08 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.35 Total: 13.51 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.98 Total: -8.87 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -1.73 Total: -86.50 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -2.08 Total: -45.38 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -82.48 2.40 -80.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602152166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.688 kcal (2) G-P(sol) polarization free energy of solvation -82.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds