Wall clock time and date at job start Sun Mar 29 2020 22:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46800 * 2 1 4 4 H 1.08996 * 109.47947 * 305.69288 * 3 2 1 5 5 C 1.50703 * 109.46973 * 185.68916 * 3 2 1 6 6 H 1.07991 * 120.00314 * 275.00931 * 5 3 2 7 7 C 1.37881 * 119.99454 * 95.01099 * 5 3 2 8 8 N 1.31516 * 119.99824 * 184.83370 * 7 5 3 9 9 Si 1.86795 * 120.00319 * 4.82493 * 7 5 3 10 10 H 1.48502 * 109.46742 * 84.86499 * 9 7 5 11 11 H 1.48496 * 109.47232 * 204.86565 * 9 7 5 12 12 H 1.48506 * 109.47322 * 324.86686 * 9 7 5 13 13 N 1.46498 * 109.47172 * 65.69788 * 3 2 1 14 14 C 1.34780 * 119.99648 * 274.99706 * 13 3 2 15 15 O 1.21279 * 120.00234 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99876 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.70754 * 305.57959 * 16 14 13 18 18 C 1.53503 * 109.70858 * 66.20986 * 16 14 13 19 19 C 1.53248 * 108.16038 * 182.08572 * 18 16 14 20 20 C 1.50444 * 109.44260 * 313.17626 * 19 18 16 21 21 C 1.30685 * 122.49442 * 17.47907 * 20 19 18 22 22 O 1.35136 * 123.34415 * 359.56696 * 21 20 19 23 23 H 1.09006 * 109.46516 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47143 * 299.99430 * 1 2 3 25 25 H 1.08995 * 109.47298 * 60.00253 * 1 2 3 26 26 H 1.09002 * 109.46807 * 239.99993 * 2 1 3 27 27 H 1.08998 * 109.47041 * 120.00467 * 2 1 3 28 28 H 0.96998 * 120.00054 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00782 * 94.99623 * 13 3 2 30 30 H 1.08995 * 109.72359 * 301.75043 * 18 16 14 31 31 H 1.09002 * 109.72608 * 62.41811 * 18 16 14 32 32 H 1.08998 * 109.47675 * 73.16460 * 19 18 16 33 33 H 1.08998 * 109.47865 * 193.17923 * 19 18 16 34 34 H 1.08003 * 118.75735 * 197.46081 * 20 19 18 35 35 H 1.07999 * 118.32696 * 179.59531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9850 -0.8345 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3333 0.7330 7 6 4.1156 1.5895 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9172 -2.8784 10 1 2.7754 3.3742 -2.9862 11 1 3.7402 1.4498 -4.1027 12 1 1.7561 1.1883 -2.7331 13 7 1.6668 2.0923 1.2588 14 6 0.4508 2.6587 1.3901 15 8 -0.3345 2.6300 0.4664 16 6 0.0667 3.3267 2.6852 17 1 0.2007 2.6296 3.5123 18 6 0.9417 4.5684 2.9067 19 6 0.5583 5.1886 4.2546 20 6 -0.9400 5.2790 4.3562 21 6 -1.7388 4.5906 3.5843 22 8 -1.2994 3.7466 2.6248 23 1 -0.3632 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.8251 1.5979 -2.3974 29 1 2.2947 2.1150 1.9978 30 1 1.9927 4.2801 2.9200 31 1 0.7673 5.2887 2.1074 32 1 0.9404 4.5656 5.0632 33 1 0.9887 6.1872 4.3307 34 1 -1.3719 5.9375 5.0953 35 1 -2.8044 4.7023 3.7199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762721915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:45 Heat of formation + Delta-G solvation = -70.709650 kcal Electronic energy + Delta-G solvation = -17615.329368 eV Core-core repulsion = 14806.634726 eV Total energy + Delta-G solvation = -2808.694642 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.39864 -38.56598 -35.17208 -33.98761 -32.48393 -32.02453 -30.81881 -27.69214 -25.90710 -23.70985 -22.80869 -20.87767 -19.60526 -18.86533 -17.83228 -16.76426 -16.18615 -15.91398 -15.16018 -14.71965 -14.49707 -13.95292 -13.88919 -13.10517 -12.97624 -12.82213 -12.77183 -12.18233 -11.94133 -11.82083 -11.35739 -10.97003 -10.92478 -10.70211 -10.68021 -10.53288 -10.00324 -9.86172 -9.24570 -9.04651 -8.72751 -8.42757 -8.05659 -6.26728 -4.30661 2.25421 3.09416 3.16486 3.27529 3.33180 3.41005 4.17249 4.30469 4.66196 4.84291 4.92247 5.08768 5.14384 5.30117 5.38984 5.57437 5.61987 5.83572 6.04555 6.07703 6.08807 6.21581 6.24514 6.47651 6.63114 6.78068 6.94637 6.99387 7.26314 7.31373 7.51428 7.58711 8.09642 8.50922 8.73586 8.91813 9.35276 10.84724 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031775 B = 0.006964 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.980571 B = 4019.647891 C = 4373.435303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.238 3.762 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.698 5.698 14 C 0.507 3.493 15 O -0.531 6.531 16 C 0.071 3.929 17 H 0.091 0.909 18 C -0.151 4.151 19 C -0.078 4.078 20 C -0.291 4.291 21 C 0.059 3.941 22 O -0.297 6.297 23 H 0.031 0.969 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.268 0.732 29 H 0.393 0.607 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.230 4.598 10.816 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.136 3.864 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.348 5.348 14 C 0.291 3.709 15 O -0.408 6.408 16 C 0.011 3.989 17 H 0.109 0.891 18 C -0.189 4.189 19 C -0.115 4.115 20 C -0.311 4.311 21 C -0.005 4.005 22 O -0.209 6.209 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.226 0.774 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.722 4.478 9.815 14.523 hybrid contribution 0.018 0.363 -0.170 0.401 sum -9.704 4.841 9.645 14.513 Atomic orbital electron populations 1.21917 0.97363 0.98945 1.02114 1.22081 0.93697 0.99343 1.01323 1.19205 0.95560 0.89111 0.82501 0.93053 1.20990 0.88554 1.51851 0.95496 0.90280 1.24930 0.94870 0.93608 0.98803 1.69878 1.09753 1.48147 1.24553 0.86923 0.81320 0.79698 0.82228 1.19845 1.21153 1.18276 1.46533 1.13833 1.55964 1.18496 1.19894 0.83266 0.79616 0.88152 1.90691 1.50548 1.58824 1.40724 1.22412 0.81811 0.96624 0.98054 0.89123 1.22219 1.00588 0.97112 0.98935 1.20335 0.93197 1.01464 0.96547 1.22495 0.95932 1.06472 1.06190 1.22103 0.98561 0.90713 0.89079 1.86027 1.26716 1.60441 1.47710 0.94999 0.93170 0.93066 0.91977 0.92933 0.92190 0.77354 0.89119 0.90063 0.91063 0.90426 0.86309 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.53 37.16 0.32 -2.63 16 2 C -0.13 -2.70 5.59 -26.73 -0.15 -2.85 16 3 C 0.24 5.54 1.89 -69.08 -0.13 5.41 16 4 H 0.05 1.32 4.73 -51.93 -0.25 1.07 16 5 C -0.53 -13.92 9.05 -34.44 -0.31 -14.23 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -25.73 13.96 55.43 0.77 -24.95 16 9 Si 0.87 21.40 26.99 -169.99 -4.59 16.82 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.26 -6.27 6.82 56.52 0.39 -5.88 16 13 N -0.70 -13.62 5.01 -54.94 -0.28 -13.90 16 14 C 0.51 9.80 5.79 -10.98 -0.06 9.74 16 15 O -0.53 -12.30 13.66 -14.16 -0.19 -12.50 16 16 C 0.07 1.08 3.27 -27.62 -0.09 0.99 16 17 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 18 C -0.15 -1.97 5.51 -26.34 -0.15 -2.12 16 19 C -0.08 -0.84 6.23 -27.88 -0.17 -1.01 16 20 C -0.29 -3.17 9.97 -36.06 -0.36 -3.53 16 21 C 0.06 0.72 10.88 29.10 0.32 1.04 16 22 O -0.30 -4.79 9.60 -36.82 -0.35 -5.14 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 1.01 5.63 -51.93 -0.29 0.72 16 25 H 0.05 1.10 7.89 -51.93 -0.41 0.70 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.39 6.62 8.49 -40.82 -0.35 6.28 16 30 H 0.09 1.09 8.04 -51.93 -0.42 0.68 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 286.67 15.07 4.32 4.32 Total: -1.00 -31.13 286.67 -6.29 -37.42 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.09 Total: 4.95 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.89 Total: -7.02 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.50 Total: -38.85 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.55 Total: -17.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.82 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.13 -6.29 -37.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.290 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds