Wall clock time and date at job start Sun Mar 29 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47220 * 2 1 4 4 H 1.08996 * 109.46653 * 55.00042 * 3 2 1 5 5 C 1.50702 * 109.46941 * 174.99998 * 3 2 1 6 6 H 1.07999 * 119.99525 * 120.00566 * 5 3 2 7 7 C 1.37869 * 120.00078 * 300.00027 * 5 3 2 8 8 N 1.31514 * 120.00203 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00249 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47158 * 89.99686 * 9 7 5 11 11 H 1.48497 * 109.47421 * 210.00321 * 9 7 5 12 12 H 1.48500 * 109.46944 * 330.00116 * 9 7 5 13 13 N 1.46502 * 109.47127 * 295.00036 * 3 2 1 14 14 C 1.34775 * 120.00037 * 84.99958 * 13 3 2 15 15 O 1.21286 * 119.99771 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00215 * 180.02562 * 14 13 3 17 17 H 1.08993 * 109.70448 * 54.41737 * 16 14 13 18 18 C 1.53505 * 109.70528 * 293.79122 * 16 14 13 19 19 C 1.53252 * 108.15548 * 177.91150 * 18 16 14 20 20 C 1.50441 * 109.49840 * 46.63560 * 19 18 16 21 21 C 1.30680 * 122.49553 * 342.95843 * 20 19 18 22 22 O 1.35140 * 123.34321 * 359.92430 * 21 20 19 23 23 H 1.08998 * 109.47343 * 299.99999 * 1 2 3 24 24 H 1.09004 * 109.47339 * 60.00119 * 1 2 3 25 25 H 1.09000 * 109.47419 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47173 * 239.99822 * 2 1 3 27 27 H 1.08997 * 109.46909 * 120.00405 * 2 1 3 28 28 H 0.97000 * 120.00245 * 180.02562 * 8 7 5 29 29 H 0.96993 * 119.99949 * 265.00316 * 13 3 2 30 30 H 1.08995 * 109.72418 * 297.57721 * 18 16 14 31 31 H 1.09000 * 109.72592 * 58.25118 * 18 16 14 32 32 H 1.09005 * 109.47549 * 166.81464 * 19 18 16 33 33 H 1.09000 * 109.48024 * 286.82426 * 19 18 16 34 34 H 1.08001 * 118.75066 * 162.73369 * 20 19 18 35 35 H 1.08002 * 118.33058 * 180.21466 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8803 1.3362 9 14 3.0964 0.1088 2.5700 10 1 2.8755 -1.3274 2.2632 11 1 3.7936 0.2347 3.8751 12 1 1.7877 0.8072 2.6386 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0362 3.3377 -2.6548 17 1 0.1608 2.6439 -3.4861 18 6 0.9088 4.5802 -2.8812 19 6 0.5100 5.2059 -4.2221 20 6 -0.9893 5.2930 -4.3095 21 6 -1.7793 4.6052 -3.5280 22 8 -1.3290 3.7572 -2.5771 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 5.8770 0.4818 2.1128 29 1 2.2719 2.1231 -1.9978 30 1 0.7435 5.2972 -2.0770 31 1 1.9596 4.2920 -2.9078 32 1 0.9395 6.2048 -4.2991 33 1 0.8830 4.5862 -5.0376 34 1 -1.4295 5.9516 -5.0436 35 1 -2.8464 4.7168 -3.6515 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762721917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:48 Heat of formation + Delta-G solvation = -61.796299 kcal Electronic energy + Delta-G solvation = -17618.032520 eV Core-core repulsion = 14809.724390 eV Total energy + Delta-G solvation = -2808.308130 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43761 -38.62797 -35.31319 -34.02201 -32.54620 -31.99112 -30.90331 -27.68532 -25.95551 -23.74054 -22.70040 -21.14961 -19.68751 -18.90149 -17.86002 -16.70291 -16.20156 -15.89361 -15.31658 -14.77385 -14.59177 -14.00594 -13.85864 -13.21252 -13.04748 -12.96049 -12.74000 -12.28223 -11.90122 -11.79428 -11.39180 -11.10976 -10.94636 -10.88833 -10.64894 -10.56332 -9.94153 -9.55952 -9.26222 -9.05586 -8.77734 -8.44882 -8.11817 -6.23339 -4.26215 2.23375 3.05793 3.13193 3.22750 3.34848 3.40210 4.13460 4.30056 4.63016 4.83129 4.89636 5.09612 5.10650 5.24361 5.34625 5.55353 5.58916 5.81003 5.96025 6.02005 6.04798 6.16786 6.19691 6.45525 6.64256 6.69018 6.82175 6.95049 7.21542 7.26502 7.47449 7.55518 8.11183 8.46707 8.72638 8.87373 9.37264 10.88565 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.006597 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.173961 B = 4243.109615 C = 4726.454067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.696 5.696 14 C 0.510 3.490 15 O -0.527 6.527 16 C 0.072 3.928 17 H 0.092 0.908 18 C -0.150 4.150 19 C -0.079 4.079 20 C -0.291 4.291 21 C 0.059 3.941 22 O -0.296 6.296 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.268 0.732 29 H 0.395 0.605 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 5.167 -10.860 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.141 3.859 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.293 3.707 15 O -0.404 6.404 16 C 0.012 3.988 17 H 0.110 0.890 18 C -0.188 4.188 19 C -0.116 4.116 20 C -0.311 4.311 21 C -0.004 4.004 22 O -0.209 6.209 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.164 4.998 -9.879 15.029 hybrid contribution 0.046 -0.354 0.077 0.366 sum -10.118 4.643 -9.803 14.833 Atomic orbital electron populations 1.21885 0.96871 0.99138 1.02333 1.22299 0.94404 0.99881 1.01200 1.19184 0.95695 0.88494 0.82519 0.93204 1.21022 0.88466 1.39942 1.07914 0.90135 1.24819 0.94867 0.95103 0.97645 1.69862 1.08683 1.44420 1.29852 0.86914 0.81001 0.79995 0.80911 1.20191 1.22127 1.18421 1.46048 1.14275 1.55968 1.18254 1.19818 0.83055 0.79566 0.88246 1.90703 1.51168 1.58671 1.39861 1.22369 0.81912 0.96637 0.97904 0.89048 1.22219 1.00507 0.97057 0.99041 1.20337 0.93161 1.01472 0.96590 1.22494 0.95963 1.06531 1.06072 1.22104 0.98507 0.90697 0.89135 1.86021 1.26645 1.60181 1.48027 0.92820 0.92958 0.94868 0.92209 0.92681 0.92246 0.77154 0.90008 0.89161 0.90373 0.91064 0.86277 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.64 16 2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.21 16 3 C 0.24 5.71 1.83 -69.08 -0.13 5.58 16 4 H 0.05 1.30 6.64 -51.93 -0.34 0.96 16 5 C -0.54 -14.18 9.31 -34.44 -0.32 -14.50 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 9 Si 0.88 21.61 24.41 -169.99 -4.15 17.46 16 10 H -0.28 -6.53 6.83 56.52 0.39 -6.14 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 13 N -0.70 -13.41 5.00 -54.93 -0.27 -13.69 16 14 C 0.51 9.67 5.76 -10.99 -0.06 9.60 16 15 O -0.53 -12.03 13.66 -14.16 -0.19 -12.23 16 16 C 0.07 1.06 3.27 -27.62 -0.09 0.97 16 17 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 18 C -0.15 -1.90 5.52 -26.34 -0.15 -2.05 16 19 C -0.08 -0.81 6.23 -27.88 -0.17 -0.99 16 20 C -0.29 -3.09 9.97 -36.06 -0.36 -3.45 16 21 C 0.06 0.70 10.88 29.10 0.32 1.02 16 22 O -0.30 -4.69 9.60 -36.84 -0.35 -5.04 16 23 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 24 H 0.05 1.05 5.65 -51.93 -0.29 0.76 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.06 1.28 3.21 -51.93 -0.17 1.11 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 6.57 8.44 -40.82 -0.34 6.22 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.05 8.04 -51.93 -0.42 0.63 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 279.99 15.07 4.22 4.22 Total: -1.00 -31.37 279.99 -5.82 -37.19 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.96 Total: 4.96 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.88 Total: -7.55 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.50 Total: -39.02 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.55 Total: -17.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.15 Total: 17.46 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.37 -5.82 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.606 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds