Wall clock time and date at job start Sun Mar 29 2020 22:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47199 * 2 1 4 4 C 1.33457 * 118.46273 * 92.71005 * 3 2 1 5 5 C 1.41796 * 118.78349 * 0.39836 * 4 3 2 6 6 O 1.21737 * 120.00009 * 259.74794 * 5 4 3 7 7 N 1.34775 * 120.00193 * 79.74980 * 5 4 3 8 8 C 1.46505 * 120.00297 * 180.02562 * 7 5 4 9 9 C 1.50692 * 109.47288 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00387 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99963 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00150 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00087 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47264 * 60.00140 * 13 11 9 15 15 H 1.48500 * 109.47417 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47311 * 299.99925 * 13 11 9 17 17 C 1.50413 * 122.42751 * 180.11471 * 4 3 2 18 18 C 1.53210 * 109.56629 * 342.61223 * 17 4 3 19 19 C 1.53485 * 108.25828 * 47.35486 * 18 17 4 20 20 O 1.34356 * 118.45922 * 272.98511 * 3 2 1 21 21 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47470 * 300.00037 * 1 2 3 23 23 H 1.08998 * 109.46986 * 60.00451 * 1 2 3 24 24 H 1.09000 * 109.47470 * 239.99963 * 2 1 3 25 25 H 1.09001 * 109.47425 * 119.99805 * 2 1 3 26 26 H 0.96998 * 119.99951 * 359.71764 * 7 5 4 27 27 H 1.09003 * 109.46648 * 300.00036 * 8 7 5 28 28 H 1.09003 * 109.46972 * 59.99330 * 8 7 5 29 29 H 0.96995 * 120.00268 * 179.97438 * 12 11 9 30 30 H 1.09006 * 109.45159 * 102.64112 * 17 4 3 31 31 H 1.09000 * 109.45917 * 222.59998 * 17 4 3 32 32 H 1.08998 * 109.70526 * 167.04514 * 18 17 4 33 33 H 1.08999 * 109.70488 * 287.62072 * 18 17 4 34 34 H 1.08994 * 109.70270 * 56.98858 * 19 18 17 35 35 H 1.08994 * 109.70226 * 177.56913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2967 2.0020 1.1719 5 6 2.1022 1.2571 2.3627 6 8 1.0964 1.4241 3.0278 7 7 3.0310 0.3641 2.7582 8 6 2.8299 -0.4059 3.9882 9 6 4.0038 -1.3262 4.2024 10 1 4.8182 -1.3368 3.4931 11 6 4.0384 -2.1546 5.3039 12 7 3.0465 -2.1422 6.1675 13 14 5.4932 -3.2959 5.5691 14 1 6.7373 -2.4933 5.6848 15 1 5.2894 -4.0764 6.8159 16 1 5.6094 -4.2258 4.4171 17 6 2.7991 3.4159 1.2760 18 6 3.3461 3.8673 -0.0821 19 6 2.3217 3.4922 -1.1619 20 8 2.1878 2.0450 -1.1796 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8306 0.2281 2.2262 27 1 2.7435 0.2763 4.8339 28 1 1.9172 -0.9957 3.9025 29 1 3.0706 -2.7253 6.9422 30 1 1.9804 4.0711 1.5736 31 1 3.5929 3.4653 2.0213 32 1 3.4965 4.9468 -0.0774 33 1 4.2926 3.3652 -0.2824 34 1 1.3592 3.9476 -0.9292 35 1 2.6682 3.8417 -2.1343 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787627661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:15 Heat of formation + Delta-G solvation = -101.643349 kcal Electronic energy + Delta-G solvation = -17393.141632 eV Core-core repulsion = 14583.105604 eV Total energy + Delta-G solvation = -2810.036028 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.77596 -39.99743 -36.13275 -35.36697 -35.06245 -34.20643 -31.35655 -29.23756 -26.78594 -25.97854 -24.53496 -22.94143 -21.98028 -20.15575 -18.98343 -17.89895 -17.43267 -17.12858 -16.66263 -16.03591 -15.95820 -15.28914 -15.03716 -14.77464 -14.57206 -14.36803 -13.98697 -13.93928 -13.76571 -13.07257 -12.94793 -12.84301 -12.68623 -12.29930 -12.18476 -12.12618 -11.72805 -11.52510 -11.43441 -10.80011 -10.79245 -9.83182 -9.31387 -8.29074 -6.46133 0.77444 1.42658 1.46808 1.55129 1.66857 2.18610 2.35745 2.80211 3.05350 3.60651 3.79910 3.92867 4.09639 4.18842 4.23546 4.34220 4.38163 4.52010 4.60182 4.74764 4.86585 4.91271 4.97598 5.08772 5.14178 5.19144 5.21585 5.26562 5.30494 5.47449 5.68246 5.84034 6.35022 6.63844 6.88108 7.22505 7.45466 8.82934 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032193 B = 0.005837 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.533909 B = 4795.444093 C = 4957.359050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C 0.154 3.846 4 C -0.312 4.312 5 C 0.567 3.433 6 O -0.606 6.606 7 N -0.703 5.703 8 C 0.267 3.733 9 C -0.557 4.557 10 H 0.081 0.919 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.985 3.015 14 H -0.263 1.263 15 H -0.284 1.284 16 H -0.261 1.261 17 C -0.061 4.061 18 C -0.145 4.145 19 C 0.050 3.950 20 O -0.313 6.313 21 H 0.075 0.925 22 H 0.032 0.968 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.404 0.596 27 H -0.015 1.015 28 H -0.011 1.011 29 H 0.269 0.731 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 9.323 -17.333 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C 0.105 3.895 4 C -0.317 4.317 5 C 0.356 3.644 6 O -0.489 6.489 7 N -0.352 5.352 8 C 0.144 3.856 9 C -0.595 4.595 10 H 0.100 0.900 11 C -0.194 4.194 12 N -0.569 5.569 13 Si 0.807 3.193 14 H -0.188 1.188 15 H -0.209 1.209 16 H -0.186 1.186 17 C -0.098 4.098 18 C -0.182 4.182 19 C -0.023 4.023 20 O -0.226 6.226 21 H 0.094 0.906 22 H 0.051 0.949 23 H 0.096 0.904 24 H 0.127 0.873 25 H 0.090 0.910 26 H 0.240 0.760 27 H 0.003 0.997 28 H 0.007 0.993 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.260 9.278 -16.890 19.312 hybrid contribution 0.557 -0.511 0.971 1.231 sum 1.817 8.767 -15.920 18.264 Atomic orbital electron populations 1.21671 0.93162 1.03097 1.01900 1.20870 0.97693 0.90360 1.04659 1.20809 0.91013 0.93641 0.83998 1.19855 1.18701 1.00968 0.92134 1.17293 0.82346 0.79108 0.85623 1.90743 1.30597 1.68860 1.58678 1.46418 1.22768 1.39654 1.26324 1.18546 0.96101 0.89366 0.81540 1.21562 1.05539 1.22485 1.09898 0.90049 1.26055 0.99679 0.98746 0.94921 1.70131 1.33709 1.39691 1.13352 0.85212 0.78155 0.78085 0.77798 1.18754 1.20946 1.18588 1.20170 1.00263 0.89865 0.99551 1.22184 0.99093 1.04220 0.92746 1.23850 1.00103 0.75896 1.02448 1.86137 1.85759 1.23946 1.26739 0.90588 0.94850 0.90434 0.87262 0.91045 0.76022 0.99683 0.99269 0.92204 0.91222 0.91192 0.86626 0.90101 0.90750 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.89 71.98 0.71 -3.28 16 2 C -0.10 -2.90 5.74 29.85 0.17 -2.73 16 3 C 0.15 4.54 5.95 24.60 0.15 4.68 16 4 C -0.31 -10.54 5.37 -20.16 -0.11 -10.65 16 5 C 0.57 25.18 5.20 85.12 0.44 25.63 16 6 O -0.61 -32.63 17.09 -4.47 -0.08 -32.70 16 7 N -0.70 -32.04 4.70 -475.74 -2.23 -34.28 16 8 C 0.27 15.19 5.43 85.63 0.46 15.66 16 9 C -0.56 -31.02 9.28 25.60 0.24 -30.79 16 10 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 11 C 0.01 0.32 5.46 84.65 0.46 0.78 16 12 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 13 Si 0.98 42.78 29.54 68.60 2.03 44.81 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 16 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 17 C -0.06 -1.62 5.89 29.83 0.18 -1.44 16 18 C -0.15 -2.44 6.23 30.83 0.19 -2.25 16 19 C 0.05 0.80 7.15 72.14 0.52 1.32 16 20 O -0.31 -7.42 10.40 -76.25 -0.79 -8.22 16 21 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.07 2.54 6.01 -2.39 -0.01 2.52 16 26 H 0.40 15.97 8.28 -92.71 -0.77 15.20 16 27 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -73.72 295.82 2.93 -70.79 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.31 Total: 19.22 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 3.41 Total: -3.08 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -1.95 Total: -90.82 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.87 Total: -40.92 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -73.72 2.93 -70.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.852 kcal (2) G-P(sol) polarization free energy of solvation -73.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds