Wall clock time and date at job start Sun Mar 29 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32991 * 120.00407 * 2 1 4 4 C 1.50707 * 119.99436 * 0.02562 * 3 2 1 5 5 C 1.47094 * 120.00286 * 180.02562 * 3 2 1 6 6 O 1.21623 * 119.99901 * 260.71446 * 5 3 2 7 7 N 1.34776 * 120.00265 * 80.70910 * 5 3 2 8 8 C 1.47418 * 125.65014 * 184.47485 * 7 5 3 9 9 C 1.54916 * 104.83210 * 155.84108 * 8 7 5 10 10 C 1.55155 * 101.57990 * 37.01028 * 9 8 7 11 11 O 1.42903 * 110.71727 * 82.86225 * 10 9 8 12 12 C 1.50702 * 110.71694 * 205.95849 * 10 9 8 13 13 H 1.08005 * 119.99487 * 114.65896 * 12 10 9 14 14 C 1.37868 * 120.00233 * 294.65312 * 12 10 9 15 15 N 1.31513 * 120.00388 * 186.82780 * 14 12 10 16 16 Si 1.86806 * 119.99823 * 6.83382 * 14 12 10 17 17 H 1.48506 * 109.47164 * 93.66788 * 16 14 12 18 18 H 1.48502 * 109.47115 * 213.66692 * 16 14 12 19 19 H 1.48493 * 109.47384 * 333.66638 * 16 14 12 20 20 C 1.47020 * 125.64560 * 4.43987 * 7 5 3 21 21 H 1.09004 * 109.47188 * 299.99739 * 1 2 3 22 22 H 1.09000 * 109.47338 * 59.99747 * 1 2 3 23 23 H 1.09005 * 109.47420 * 180.02562 * 1 2 3 24 24 H 1.08001 * 119.99797 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46650 * 265.88109 * 4 3 2 26 26 H 1.08993 * 109.47348 * 25.89027 * 4 3 2 27 27 H 1.09002 * 109.46903 * 145.89417 * 4 3 2 28 28 H 1.08999 * 110.36791 * 37.00222 * 8 7 5 29 29 H 1.09002 * 110.37366 * 274.67828 * 8 7 5 30 30 H 1.09006 * 110.99830 * 278.93672 * 9 8 7 31 31 H 1.09001 * 111.03592 * 155.10186 * 9 8 7 32 32 H 0.96704 * 113.99340 * 179.97438 * 11 10 9 33 33 H 0.97005 * 120.00148 * 179.97438 * 15 14 12 34 34 H 1.09008 * 109.88106 * 61.67820 * 20 7 5 35 35 H 1.08996 * 109.88480 * 300.50779 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4184 2.4568 0.0006 5 6 3.6429 1.1517 -0.0006 6 8 4.2514 1.3214 1.0387 7 7 4.3164 0.9635 -1.1527 8 6 5.7802 0.8475 -1.2832 9 6 5.9997 0.0517 -2.5941 10 6 4.8626 0.6088 -3.4907 11 8 5.2564 1.8401 -4.0999 12 6 4.4672 -0.3997 -4.5384 13 1 3.4801 -0.8377 -4.5209 14 6 5.3654 -0.7632 -5.5192 15 7 4.9801 -1.5383 -6.5093 16 14 7.1299 -0.1547 -5.4417 17 1 7.9722 -1.1653 -4.7528 18 1 7.6407 0.0592 -6.8196 19 1 7.1795 1.1256 -4.6911 20 6 3.7128 0.8391 -2.4875 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 2.0469 -0.9353 -0.0004 25 1 1.3003 2.8085 -1.0243 26 1 0.4363 2.3092 0.4496 27 1 1.9739 3.1968 0.5768 28 1 6.1948 0.3029 -0.4349 29 1 6.2339 1.8357 -1.3589 30 1 5.8767 -1.0184 -2.4267 31 1 6.9778 0.2679 -3.0239 32 1 4.5806 2.2299 -4.6712 33 1 5.6120 -1.7937 -7.1995 34 1 3.1788 1.7554 -2.7397 35 1 3.0282 -0.0088 -2.5073 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:18 Heat of formation + Delta-G solvation = -86.580275 kcal Electronic energy + Delta-G solvation = -17730.252829 eV Core-core repulsion = 14920.869984 eV Total energy + Delta-G solvation = -2809.382844 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27335 -39.26749 -36.58735 -36.11913 -34.48331 -32.10043 -30.31076 -29.88555 -27.50969 -26.74028 -24.26783 -21.70851 -21.64032 -19.79992 -18.96630 -17.95669 -17.33971 -16.81269 -16.65188 -16.21578 -15.22412 -15.07067 -14.85132 -14.58379 -14.33582 -14.14481 -13.94890 -13.43631 -13.41548 -13.15387 -13.14011 -12.87725 -12.82288 -12.44272 -12.22741 -12.20382 -11.75673 -11.07158 -10.90892 -10.76200 -10.30354 -9.92081 -9.70166 -8.36817 -6.50273 0.80970 1.37905 1.46030 1.47572 1.67782 2.06019 2.39347 2.99061 3.43035 3.58690 3.80107 4.00953 4.05267 4.18176 4.36010 4.41766 4.48571 4.57442 4.73219 4.76152 4.83322 4.89404 4.92748 5.02707 5.05828 5.12655 5.14803 5.40280 5.48891 5.50528 5.68663 6.06539 6.45129 6.60771 6.99401 7.15707 7.31862 8.76633 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032060 B = 0.007583 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.142005 B = 3691.431486 C = 4132.001388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C -0.185 4.185 4 C -0.100 4.100 5 C 0.563 3.437 6 O -0.590 6.590 7 N -0.606 5.606 8 C 0.111 3.889 9 C -0.130 4.130 10 C 0.216 3.784 11 O -0.574 6.574 12 C -0.546 4.546 13 H 0.049 0.951 14 C 0.042 3.958 15 N -0.932 5.932 16 Si 0.925 3.075 17 H -0.283 1.283 18 H -0.305 1.305 19 H -0.207 1.207 20 C 0.102 3.898 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.379 0.621 33 H 0.268 0.732 34 H 0.079 0.921 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 5.922 9.356 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.128 4.128 3 C -0.188 4.188 4 C -0.157 4.157 5 C 0.354 3.646 6 O -0.472 6.472 7 N -0.338 5.338 8 C -0.011 4.011 9 C -0.168 4.168 10 C 0.176 3.824 11 O -0.382 6.382 12 C -0.583 4.583 13 H 0.067 0.933 14 C -0.159 4.159 15 N -0.570 5.570 16 Si 0.751 3.249 17 H -0.210 1.210 18 H -0.233 1.233 19 H -0.129 1.129 20 C -0.021 4.021 21 H 0.106 0.894 22 H 0.102 0.898 23 H 0.093 0.907 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.228 0.772 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.908 5.837 10.145 13.111 hybrid contribution 0.597 -0.314 -0.803 1.049 sum -5.311 5.523 9.342 12.083 Atomic orbital electron populations 1.20939 0.89247 1.03913 1.03472 1.23467 0.98481 0.95748 0.95081 1.21396 0.90462 0.99072 1.07828 1.20735 1.00065 0.91747 1.03104 1.18847 0.89129 0.75069 0.81551 1.90735 1.71297 1.52561 1.32639 1.48682 1.08062 1.69731 1.07296 1.22220 0.80833 1.00294 0.97794 1.23130 0.99611 0.99815 0.94200 1.19794 0.90184 0.83058 0.89381 1.86472 1.46309 1.39081 1.66316 1.21405 1.00783 1.24818 1.11343 0.93290 1.25633 1.02803 0.93631 0.93819 1.70048 1.37057 1.37291 1.12598 0.86298 0.79812 0.81868 0.76948 1.20993 1.23289 1.12889 1.22659 0.97016 1.01605 0.80781 0.89432 0.89836 0.90653 0.88144 0.90057 0.88301 0.92563 0.90766 0.91154 0.90147 0.90385 0.77213 0.92350 0.90278 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.85 71.23 0.63 -1.31 16 2 C -0.11 -2.66 9.97 24.52 0.24 -2.42 16 3 C -0.18 -5.18 4.93 -18.70 -0.09 -5.27 16 4 C -0.10 -2.11 9.63 71.24 0.69 -1.43 16 5 C 0.56 20.43 7.23 86.57 0.63 21.06 16 6 O -0.59 -25.21 17.40 -4.10 -0.07 -25.28 16 7 N -0.61 -22.04 3.33 -816.05 -2.71 -24.75 16 8 C 0.11 4.04 6.88 86.86 0.60 4.64 16 9 C -0.13 -5.15 4.93 31.99 0.16 -4.99 16 10 C 0.22 8.99 0.69 -10.35 -0.01 8.98 16 11 O -0.57 -22.73 10.26 -148.98 -1.53 -24.26 16 12 C -0.55 -27.75 8.78 25.60 0.22 -27.53 16 13 H 0.05 2.74 7.79 -2.91 -0.02 2.71 16 14 C 0.04 2.26 5.46 84.65 0.46 2.73 16 15 N -0.93 -54.46 13.96 21.44 0.30 -54.16 16 16 Si 0.92 42.27 24.42 68.60 1.68 43.95 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 19 H -0.21 -8.88 4.86 99.48 0.48 -8.40 16 20 C 0.10 3.68 5.83 86.73 0.51 4.19 16 21 H 0.09 1.16 7.41 -2.39 -0.02 1.14 16 22 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 23 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.10 2.68 8.05 -2.91 -0.02 2.66 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 1.54 6.35 -2.39 -0.02 1.52 16 27 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.07 2.61 8.08 -2.39 -0.02 2.59 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.08 3.26 8.04 -2.38 -0.02 3.24 16 31 H 0.08 3.09 4.88 -2.39 -0.01 3.08 16 32 H 0.38 12.81 9.07 -74.05 -0.67 12.14 16 33 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 34 H 0.08 2.55 8.07 -2.38 -0.02 2.53 16 35 H 0.07 2.59 7.65 -2.39 -0.02 2.57 16 Total: -1.00 -65.96 285.97 1.89 -64.07 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.19 Total: 21.79 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 4.04 Total: -1.35 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.41 Total: -78.91 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -1.60 Total: -49.54 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.68 Total: 43.95 kcal Total: -65.96 1.89 -64.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.507 kcal (2) G-P(sol) polarization free energy of solvation -65.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds