Wall clock time and date at job start Sun Mar 29 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32997 * 119.99652 * 2 1 4 4 C 1.50697 * 119.99905 * 359.97438 * 3 2 1 5 5 C 1.47101 * 119.99807 * 179.97438 * 3 2 1 6 6 O 1.21608 * 119.99930 * 259.82919 * 5 3 2 7 7 N 1.34775 * 119.99720 * 79.83037 * 5 3 2 8 8 C 1.47027 * 125.65080 * 354.96553 * 7 5 3 9 9 C 1.54321 * 107.40043 * 178.90051 * 8 7 5 10 10 C 1.55396 * 102.83268 * 337.97850 * 9 8 7 11 11 O 1.42897 * 110.89290 * 277.26899 * 10 9 8 12 12 C 1.50701 * 111.07328 * 153.48558 * 10 9 8 13 13 H 1.08002 * 119.99703 * 6.21152 * 12 10 9 14 14 C 1.37881 * 120.00140 * 186.21144 * 12 10 9 15 15 N 1.31511 * 119.99942 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99818 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47341 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46950 * 120.00219 * 16 14 12 19 19 H 1.48503 * 109.46826 * 240.00010 * 16 14 12 20 20 C 1.47426 * 125.64785 * 175.01554 * 7 5 3 21 21 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47409 * 300.00281 * 1 2 3 23 23 H 1.09002 * 109.47514 * 60.00645 * 1 2 3 24 24 H 1.07997 * 120.00055 * 179.97438 * 2 1 3 25 25 H 1.09010 * 109.47232 * 275.05646 * 4 3 2 26 26 H 1.08994 * 109.47530 * 35.05802 * 4 3 2 27 27 H 1.08998 * 109.47196 * 155.06460 * 4 3 2 28 28 H 1.08994 * 109.88491 * 298.39745 * 8 7 5 29 29 H 1.09002 * 109.87851 * 59.40508 * 8 7 5 30 30 H 1.09007 * 110.71905 * 96.25374 * 9 8 7 31 31 H 1.09007 * 110.71829 * 219.52341 * 9 8 7 32 32 H 0.96696 * 114.00430 * 173.68756 * 11 10 9 33 33 H 0.96999 * 120.00458 * 180.02562 * 15 14 12 34 34 H 1.09005 * 110.36418 * 322.92639 * 20 7 5 35 35 H 1.08999 * 110.37144 * 85.13982 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4183 2.4569 -0.0006 5 6 3.6429 1.1519 0.0006 6 8 4.2506 1.3381 1.0374 7 7 4.3172 0.9455 -1.1480 8 6 3.7155 0.6060 -2.4458 9 6 4.8631 0.4934 -3.4713 10 6 5.9966 1.3288 -2.8139 11 8 5.8242 2.7217 -3.0823 12 6 7.3527 0.8573 -3.2719 13 1 7.4308 0.1058 -4.0436 14 6 8.4936 1.3852 -2.7057 15 7 8.3985 2.2999 -1.7656 16 14 10.1745 0.8011 -3.2739 17 1 10.0095 -0.2258 -4.3338 18 1 10.9418 1.9520 -3.8141 19 1 10.9084 0.2125 -2.1249 20 6 5.7804 1.0220 -1.3109 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 2.0470 -0.9353 0.0004 25 1 1.1586 2.7260 -1.0245 26 1 0.5080 2.3510 0.5893 27 1 2.0435 3.2376 0.4327 28 1 3.1890 -0.3456 -2.3727 29 1 3.0224 1.3905 -2.7496 30 1 5.1711 -0.5452 -3.5930 31 1 4.5687 0.9242 -4.4284 32 1 6.4492 3.2927 -2.6150 33 1 9.2011 2.6716 -1.3675 34 1 6.1890 1.8249 -0.6973 35 1 6.2419 0.0707 -1.0461 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015273.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:20 Heat of formation + Delta-G solvation = -98.567940 kcal Electronic energy + Delta-G solvation = -17664.818754 eV Core-core repulsion = 14854.916086 eV Total energy + Delta-G solvation = -2809.902668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13208 -39.03532 -36.57273 -35.98428 -34.26131 -31.86984 -30.23473 -29.59268 -27.74634 -26.37922 -24.33891 -21.69640 -21.45918 -19.36332 -18.95197 -17.82955 -17.23212 -16.73353 -16.67168 -16.18137 -15.15238 -14.95213 -14.71789 -14.57422 -14.12856 -13.95022 -13.53867 -13.35798 -13.28304 -13.19195 -12.90587 -12.88294 -12.54223 -12.36911 -12.22102 -12.18996 -12.10716 -11.24415 -10.99122 -10.68606 -10.32052 -9.89350 -9.53674 -8.27187 -6.44723 0.84353 1.39554 1.42743 1.53560 1.54343 2.18622 2.37900 2.99173 3.54911 3.77071 4.01981 4.08053 4.21040 4.32727 4.38931 4.51311 4.62341 4.70550 4.73391 4.87631 4.93183 5.01015 5.04583 5.05901 5.15279 5.27321 5.37061 5.43393 5.53547 5.71573 5.72935 6.04249 6.58791 6.66930 7.09691 7.24204 7.32210 8.78498 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042726 B = 0.006393 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.187674 B = 4378.773276 C = 4545.134542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 C -0.182 4.182 4 C -0.097 4.097 5 C 0.551 3.449 6 O -0.605 6.605 7 N -0.608 5.608 8 C 0.111 3.889 9 C -0.112 4.112 10 C 0.232 3.768 11 O -0.586 6.586 12 C -0.555 4.555 13 H 0.070 0.930 14 C 0.024 3.976 15 N -0.918 5.918 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.283 1.283 20 C 0.107 3.893 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.372 0.628 33 H 0.269 0.731 34 H 0.043 0.957 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 -4.228 -1.286 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.123 4.123 3 C -0.185 4.185 4 C -0.154 4.154 5 C 0.342 3.658 6 O -0.488 6.488 7 N -0.339 5.339 8 C -0.011 4.011 9 C -0.150 4.150 10 C 0.192 3.808 11 O -0.394 6.394 12 C -0.594 4.594 13 H 0.089 0.911 14 C -0.176 4.176 15 N -0.558 5.558 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.209 1.209 20 C -0.016 4.016 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.124 0.876 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.221 0.779 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.788 -4.248 -0.976 15.417 hybrid contribution 2.191 0.187 0.555 2.268 sum -12.597 -4.061 -0.421 13.242 Atomic orbital electron populations 1.20937 0.88877 1.04102 1.03458 1.23482 0.98509 0.95403 0.94930 1.21369 0.89722 0.99299 1.08069 1.20695 0.99535 0.91619 1.03567 1.19136 0.89524 0.75429 0.81746 1.90730 1.71764 1.53167 1.33154 1.48909 1.08499 1.67026 1.09509 1.22122 0.96183 1.01155 0.81611 1.22680 0.93638 1.00366 0.98294 1.19925 0.93213 0.79673 0.87997 1.86093 1.60999 1.19148 1.73116 1.21843 0.91198 1.24064 1.22249 0.91142 1.25864 1.03374 0.94395 0.93999 1.69852 1.30677 1.28657 1.26566 0.85382 0.78892 0.78381 0.78229 1.18571 1.20494 1.20946 1.22832 0.78493 0.99151 1.01150 0.90127 0.90063 0.89429 0.87579 0.89393 0.88124 0.94029 0.89284 0.90581 0.89242 0.89336 0.77918 0.92180 0.93796 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 8.98 71.24 0.64 -0.99 16 2 C -0.10 -2.41 9.93 24.52 0.24 -2.17 16 3 C -0.18 -5.47 4.94 -18.70 -0.09 -5.56 16 4 C -0.10 -2.34 9.46 71.24 0.67 -1.67 16 5 C 0.55 23.49 7.19 86.57 0.62 24.12 16 6 O -0.61 -31.68 17.40 -4.06 -0.07 -31.76 16 7 N -0.61 -25.98 3.33 -816.04 -2.71 -28.69 16 8 C 0.11 3.74 6.43 86.73 0.56 4.30 16 9 C -0.11 -4.26 6.15 31.87 0.20 -4.06 16 10 C 0.23 11.39 0.87 -10.06 -0.01 11.38 16 11 O -0.59 -30.38 13.16 -148.98 -1.96 -32.34 16 12 C -0.56 -29.16 8.28 25.60 0.21 -28.95 16 13 H 0.07 3.56 7.79 -2.91 -0.02 3.54 16 14 C 0.02 1.29 5.29 84.66 0.45 1.74 16 15 N -0.92 -51.10 10.69 21.45 0.23 -50.88 16 16 Si 0.97 42.16 29.54 68.60 2.03 44.18 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 C 0.11 5.44 5.37 86.86 0.47 5.90 16 21 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.08 1.01 7.41 -2.39 -0.02 0.99 16 23 H 0.09 1.00 8.10 -2.39 -0.02 0.98 16 24 H 0.11 2.55 8.05 -2.91 -0.02 2.53 16 25 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.10 1.76 6.70 -2.39 -0.02 1.74 16 27 H 0.04 1.19 8.08 -2.39 -0.02 1.17 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.09 3.16 8.04 -2.38 -0.02 3.14 16 31 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 32 H 0.37 20.32 7.57 -74.06 -0.56 19.76 16 33 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.04 2.57 7.38 -2.38 -0.02 2.55 16 35 H 0.04 2.16 8.03 -2.39 -0.02 2.14 16 Total: -1.00 -68.08 294.49 1.99 -66.09 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.52 Total: 29.35 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 3.96 Total: 4.03 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.49 Total: -79.57 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -2.03 Total: -64.09 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -68.08 1.99 -66.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015273.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.474 kcal (2) G-P(sol) polarization free energy of solvation -68.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds