Wall clock time and date at job start Sun Mar 29 2020 23:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.53377 * 2 1 4 4 C 1.53592 * 109.61143 * 120.36778 * 2 1 3 5 5 C 1.53227 * 109.35674 * 178.42932 * 4 2 1 6 6 C 1.51320 * 108.65233 * 303.69911 * 5 4 2 7 7 O 1.20764 * 121.01957 * 232.57060 * 6 5 4 8 8 C 1.51497 * 117.95839 * 52.59494 * 6 5 4 9 9 N 1.46868 * 109.50118 * 239.90389 * 2 1 3 10 10 C 1.34777 * 120.71918 * 2.96081 * 9 2 1 11 11 O 1.21282 * 119.99828 * 354.34651 * 10 9 2 12 12 C 1.50703 * 120.00204 * 174.34157 * 10 9 2 13 13 C 1.52996 * 109.47186 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47186 * 179.97438 * 13 12 10 15 15 H 1.07992 * 119.99704 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99833 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00312 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99697 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46953 * 60.00050 * 18 16 14 20 20 H 1.48499 * 109.46599 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46866 * 299.99824 * 18 16 14 22 22 H 1.09003 * 109.46990 * 180.10256 * 1 2 3 23 23 H 1.08998 * 109.47127 * 300.09225 * 1 2 3 24 24 H 1.08997 * 109.47454 * 60.09969 * 1 2 3 25 25 H 1.09004 * 109.61386 * 58.40524 * 4 2 1 26 26 H 1.09001 * 109.41260 * 298.33746 * 4 2 1 27 27 H 1.08999 * 109.60948 * 183.94270 * 5 4 2 28 28 H 1.09011 * 109.60379 * 63.44812 * 5 4 2 29 29 H 1.09004 * 109.82984 * 194.31066 * 8 6 5 30 30 H 1.09004 * 109.83099 * 73.37510 * 8 6 5 31 31 H 1.08994 * 109.46987 * 60.00032 * 12 10 9 32 32 H 1.09000 * 109.47090 * 300.00092 * 12 10 9 33 33 H 1.09000 * 109.46857 * 299.99837 * 13 12 10 34 34 H 1.09004 * 109.47454 * 59.99933 * 13 12 10 35 35 H 0.97000 * 120.00341 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0456 -0.7314 1.2483 5 6 3.5773 -0.7623 1.2226 6 6 4.0267 -1.4104 -0.0688 7 8 4.8034 -2.3351 -0.0637 8 6 3.4726 -0.8634 -1.3684 9 7 2.0203 -0.6942 -1.1978 10 6 1.1594 -1.1616 -2.1235 11 8 -0.0355 -1.1028 -1.9247 12 6 1.6816 -1.7571 -3.4056 13 6 0.5058 -2.2065 -4.2752 14 6 1.0280 -2.8014 -5.5576 15 1 2.0920 -2.8533 -5.7348 16 6 0.1472 -3.2794 -6.5046 17 7 -1.1486 -3.2166 -6.2886 18 14 0.7945 -4.0162 -8.0945 19 1 1.6561 -5.1849 -7.7836 20 1 -0.3469 -4.4525 -8.9384 21 1 1.5885 -2.9962 -8.8255 22 1 -0.3633 -1.0277 0.0018 23 1 -0.3633 0.5153 0.8891 24 1 -0.3634 0.5123 -0.8908 25 1 1.6616 -1.7516 1.2593 26 1 1.7075 -0.2061 2.1415 27 1 3.9458 -1.3407 2.0698 28 1 3.9645 0.2554 1.2752 29 1 3.6705 -1.5648 -2.1791 30 1 3.9333 0.0992 -1.5907 31 1 2.3135 -2.6151 -3.1767 32 1 2.2651 -1.0091 -3.9425 33 1 -0.0780 -2.9544 -3.7386 34 1 -0.1259 -1.3481 -4.5041 35 1 -1.7682 -3.5532 -6.9547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885077610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:57 Heat of formation + Delta-G solvation = -93.171661 kcal Electronic energy + Delta-G solvation = -17359.247870 eV Core-core repulsion = 14549.579202 eV Total energy + Delta-G solvation = -2809.668668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74020 -40.19444 -37.53958 -35.67254 -34.41331 -32.82750 -31.90207 -28.46851 -27.44963 -25.55789 -24.19997 -22.32845 -21.12407 -19.75143 -18.70371 -17.53744 -17.39398 -16.83414 -16.47656 -16.34505 -16.06995 -15.78350 -15.06302 -14.88410 -14.24757 -14.15678 -13.77664 -13.57757 -13.32097 -13.17530 -12.98744 -12.78220 -12.50818 -12.47584 -12.11917 -12.05632 -11.90747 -11.58373 -11.30564 -10.90736 -10.56726 -10.01101 -9.53495 -8.18963 -6.32996 0.74320 1.41194 1.45506 1.53246 1.65434 1.97446 2.42273 2.97508 3.13967 3.61200 3.69566 3.83842 3.95613 4.19865 4.29025 4.41752 4.47919 4.51098 4.54575 4.60832 4.81606 4.89357 4.99405 5.02548 5.04616 5.27986 5.38811 5.48461 5.61675 5.71471 5.83757 6.15586 6.18912 6.42429 6.85003 7.24897 7.37316 8.93352 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.005718 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.449881 B = 4895.946996 C = 5557.360806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.133 3.867 3 H 0.112 0.888 4 C -0.118 4.118 5 C -0.159 4.159 6 C 0.355 3.645 7 O -0.488 6.488 8 C 0.056 3.944 9 N -0.611 5.611 10 C 0.513 3.487 11 O -0.560 6.560 12 C -0.124 4.124 13 C 0.046 3.954 14 C -0.546 4.546 15 H 0.073 0.927 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.261 1.261 22 H 0.039 0.961 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.105 0.895 30 H 0.142 0.858 31 H 0.091 0.909 32 H 0.104 0.896 33 H -0.019 1.019 34 H -0.013 1.013 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.498 9.630 15.448 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.031 3.969 3 H 0.129 0.871 4 C -0.157 4.157 5 C -0.197 4.197 6 C 0.232 3.768 7 O -0.362 6.362 8 C -0.066 4.066 9 N -0.347 5.347 10 C 0.303 3.697 11 O -0.439 6.439 12 C -0.163 4.163 13 C 0.008 3.992 14 C -0.584 4.584 15 H 0.091 0.909 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.796 3.204 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.186 1.186 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.115 0.885 28 H 0.157 0.843 29 H 0.123 0.877 30 H 0.159 0.841 31 H 0.109 0.891 32 H 0.122 0.878 33 H -0.001 1.001 34 H 0.005 0.995 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.112 9.128 15.498 21.142 hybrid contribution -0.375 -0.674 -1.045 1.298 sum 10.737 8.454 14.453 19.891 Atomic orbital electron populations 1.22035 0.93957 1.01821 1.00990 1.21719 0.95014 0.96862 0.83294 0.87056 1.22055 0.93486 1.01234 0.98882 1.22345 0.96915 1.05093 0.95325 1.25664 0.76410 0.80387 0.94380 1.90446 1.30188 1.25364 1.90165 1.22703 0.80303 1.05738 0.97898 1.48217 1.05767 1.58345 1.22401 1.21188 0.86151 0.76851 0.85474 1.90744 1.17632 1.56560 1.78916 1.21720 1.00438 1.01496 0.92667 1.18658 0.92692 0.94438 0.93411 1.21679 0.93817 1.40100 1.02803 0.90926 1.26098 0.94926 0.96361 1.02784 1.70158 1.03074 1.47645 1.36741 0.85402 0.77786 0.79097 0.78148 1.18979 1.21160 1.18588 0.94228 0.90909 0.93756 0.93380 0.86173 0.88460 0.84273 0.87707 0.84085 0.89086 0.87780 1.00086 0.99504 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 7.59 71.98 0.55 -2.94 16 2 C 0.13 2.65 3.41 45.12 0.15 2.81 16 3 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.12 -1.76 5.40 30.87 0.17 -1.59 16 5 C -0.16 -1.97 6.14 30.12 0.18 -1.78 16 6 C 0.36 7.18 6.87 29.55 0.20 7.38 16 7 O -0.49 -13.79 17.90 -1.46 -0.03 -13.81 16 8 C 0.06 1.12 6.51 85.75 0.56 1.67 16 9 N -0.61 -15.99 2.97 -796.87 -2.37 -18.36 16 10 C 0.51 19.47 7.60 87.66 0.67 20.14 16 11 O -0.56 -25.81 11.37 -3.03 -0.03 -25.85 16 12 C -0.12 -5.04 4.12 29.85 0.12 -4.92 16 13 C 0.05 2.56 4.26 29.85 0.13 2.68 16 14 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 15 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 16 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 17 N -0.94 -59.66 13.29 21.45 0.28 -59.37 16 18 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H 0.04 1.33 6.77 -2.39 -0.02 1.31 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.46 6.71 -2.39 -0.02 1.44 16 25 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.10 2.36 6.08 -2.39 -0.01 2.34 16 30 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 3.47 7.39 -2.39 -0.02 3.45 16 32 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 33 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 34 H -0.01 -0.84 8.10 -2.38 -0.02 -0.86 16 35 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -79.11 287.20 4.38 -74.74 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 1.07 Total: 3.48 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 3.43 Total: -7.57 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.08 Total: -77.73 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.06 Total: -39.66 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -79.11 4.38 -74.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885077610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.436 kcal (2) G-P(sol) polarization free energy of solvation -79.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds