Wall clock time and date at job start Sun Mar 29 2020 22:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.68049 * 2 1 4 4 C 1.52997 * 117.49994 * 144.10141 * 3 2 1 5 5 C 1.52996 * 117.49924 * 75.44322 * 3 2 1 6 6 C 1.53305 * 109.71101 * 120.53376 * 2 1 3 7 7 O 1.42951 * 109.26511 * 67.46664 * 6 2 1 8 8 C 1.42958 * 114.17325 * 62.49592 * 7 6 2 9 9 C 1.53299 * 109.26685 * 297.50252 * 8 7 6 10 10 N 1.47151 * 108.38258 * 52.27459 * 9 8 7 11 11 C 1.34777 * 120.98473 * 129.44153 * 10 9 8 12 12 O 1.21688 * 120.00414 * 174.92580 * 11 10 9 13 13 C 1.46375 * 119.99664 * 354.92184 * 11 10 9 14 14 H 1.08004 * 120.00092 * 5.18501 * 13 11 10 15 15 C 1.40053 * 119.99692 * 185.18595 * 13 11 10 16 16 N 1.30671 * 120.00333 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99856 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47238 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47145 * 119.99782 * 17 15 13 20 20 H 1.48500 * 109.47333 * 240.00353 * 17 15 13 21 21 H 1.09005 * 109.47189 * 180.51968 * 1 2 3 22 22 H 1.08991 * 109.47582 * 300.52131 * 1 2 3 23 23 H 1.09002 * 109.46937 * 60.52641 * 1 2 3 24 24 H 1.09004 * 115.54605 * 289.77182 * 3 2 1 25 25 H 1.08993 * 117.50172 * 0.02562 * 4 3 2 26 26 H 1.09001 * 117.49679 * 145.01838 * 4 3 2 27 27 H 1.09004 * 117.49298 * 214.98190 * 5 3 2 28 28 H 1.08998 * 117.49993 * 359.97417 * 5 3 2 29 29 H 1.09003 * 109.51216 * 187.36145 * 6 2 1 30 30 H 1.09003 * 109.50953 * 307.46419 * 6 2 1 31 31 H 1.09005 * 109.51600 * 177.55021 * 8 7 6 32 32 H 1.09001 * 109.51223 * 57.45122 * 8 7 6 33 33 H 1.09004 * 109.68248 * 171.99575 * 9 8 7 34 34 H 1.08988 * 109.68444 * 292.55284 * 9 8 7 35 35 H 0.96995 * 119.99676 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4406 0.0000 4 6 3.3183 1.7356 0.7957 5 6 1.9620 2.2207 1.3135 6 6 2.0470 -0.7332 1.2431 7 8 1.7193 -2.1210 1.1425 8 6 2.3275 -2.7873 0.0335 9 6 1.8248 -2.1594 -1.2715 10 7 2.0256 -0.7037 -1.1936 11 6 2.6456 -0.0347 -2.1858 12 8 2.7206 1.1792 -2.1470 13 6 3.2288 -0.7685 -3.3101 14 1 3.0902 -1.8367 -3.3879 15 6 3.9666 -0.0852 -4.2849 16 7 4.1347 1.2072 -4.1905 17 14 4.7103 -1.0214 -5.7202 18 1 4.3781 -2.4635 -5.5959 19 1 4.1590 -0.4940 -6.9942 20 1 6.1855 -0.8514 -5.7110 21 1 -0.3634 -1.0277 0.0093 22 1 -0.3634 0.5219 0.8852 23 1 -0.3633 0.5056 -0.8947 24 1 1.8903 1.9953 -0.9255 25 1 3.7890 0.9033 1.3189 26 1 4.0007 2.4846 0.3940 27 1 1.7526 3.2887 1.2522 28 1 1.5397 1.7077 2.1776 29 1 3.1291 -0.6194 1.3092 30 1 1.5815 -0.3120 2.1341 31 1 2.0631 -3.8446 0.0543 32 1 3.4106 -2.6817 0.0948 33 1 2.3871 -2.5630 -2.1136 34 1 0.7646 -2.3773 -1.3992 35 1 4.6454 1.6804 -4.8659 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890589732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:16 Heat of formation + Delta-G solvation = -47.531581 kcal Electronic energy + Delta-G solvation = -18527.127323 eV Core-core repulsion = 15719.437758 eV Total energy + Delta-G solvation = -2807.689566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43833 -38.52764 -37.82315 -35.17452 -34.55527 -32.73819 -29.62833 -28.23456 -27.18330 -25.00106 -23.19066 -23.03097 -22.05005 -19.81088 -18.43497 -17.66583 -17.46810 -16.50546 -16.33434 -16.15101 -15.76989 -15.59427 -14.85796 -14.57616 -14.44875 -13.50632 -13.41287 -13.29438 -13.21717 -12.79969 -12.69352 -12.55169 -12.39975 -12.05501 -12.00931 -11.69958 -11.58313 -11.20002 -10.94949 -10.83718 -10.75930 -9.06134 -8.93062 -8.16289 -6.79845 1.38006 1.39238 1.55104 2.21459 2.50051 2.61476 2.89545 3.21115 3.64033 3.78128 3.87697 4.06230 4.20626 4.24428 4.28581 4.32223 4.45430 4.62640 4.70399 4.75462 4.79162 4.86310 4.93210 4.99752 5.02070 5.14281 5.29518 5.34724 5.39465 5.68219 5.78624 6.15150 6.20888 6.48557 6.92248 7.48552 8.54180 8.73618 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.009664 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.307118 B = 2896.621228 C = 3527.741740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.169 3.831 3 C -0.150 4.150 4 C -0.187 4.187 5 C -0.168 4.168 6 C 0.060 3.940 7 O -0.386 6.386 8 C 0.051 3.949 9 C 0.081 3.919 10 N -0.640 5.640 11 C 0.548 3.452 12 O -0.596 6.596 13 C -0.572 4.572 14 H 0.088 0.912 15 C 0.034 3.966 16 N -0.819 5.819 17 Si 0.987 3.013 18 H -0.247 1.247 19 H -0.272 1.272 20 H -0.271 1.271 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.032 0.968 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.045 0.955 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 -6.551 8.214 11.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.083 3.917 3 C -0.168 4.168 4 C -0.224 4.224 5 C -0.205 4.205 6 C -0.017 4.017 7 O -0.304 6.304 8 C -0.026 4.026 9 C -0.042 4.042 10 N -0.377 5.377 11 C 0.354 3.646 12 O -0.483 6.483 13 C -0.608 4.608 14 H 0.106 0.894 15 C -0.181 4.181 16 N -0.448 5.448 17 Si 0.808 3.192 18 H -0.169 1.169 19 H -0.197 1.197 20 H -0.197 1.197 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.133 0.867 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.113 0.887 28 H 0.131 0.869 29 H 0.063 0.937 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.675 -5.842 8.301 10.795 hybrid contribution 0.763 0.178 -1.179 1.416 sum -2.912 -5.663 7.122 9.554 Atomic orbital electron populations 1.21883 0.93842 1.01901 1.01600 1.20599 0.94301 0.90461 0.86314 1.23021 1.01234 0.96188 0.96383 1.22814 0.91608 1.03062 1.04924 1.23169 0.99036 1.00508 0.97800 1.23175 0.99273 0.81651 0.97641 1.87836 1.72545 1.21846 1.48193 1.23096 0.96662 0.97849 0.85042 1.22296 1.01065 0.81331 0.99545 1.48196 1.62356 1.07329 1.19821 1.18498 0.77182 0.86828 0.82095 1.90382 1.63565 1.15383 1.78938 1.21538 1.35312 0.95847 1.08121 0.89386 1.26825 0.94739 0.95386 1.01127 1.70168 1.31622 1.10093 1.32962 0.85117 0.77894 0.79575 0.76659 1.16946 1.19728 1.19658 0.91841 0.90006 0.94855 0.86652 0.88831 0.91772 0.88713 0.86873 0.93723 0.86286 0.85023 0.93838 0.88849 0.91895 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.52 71.98 0.61 -3.91 16 2 C 0.17 6.49 0.90 3.58 0.00 6.49 16 3 C -0.15 -6.31 3.39 -10.80 -0.04 -6.35 16 4 C -0.19 -7.25 9.76 30.62 0.30 -6.95 16 5 C -0.17 -5.32 9.87 30.61 0.30 -5.02 16 6 C 0.06 1.94 4.71 72.08 0.34 2.28 16 7 O -0.39 -12.13 10.38 -148.98 -1.55 -13.68 16 8 C 0.05 1.51 6.98 72.08 0.50 2.01 16 9 C 0.08 2.92 6.16 86.36 0.53 3.45 16 10 N -0.64 -28.66 2.71 -775.64 -2.10 -30.77 16 11 C 0.55 30.72 7.50 86.36 0.65 31.37 16 12 O -0.60 -37.30 10.94 -4.31 -0.05 -37.35 16 13 C -0.57 -31.51 8.88 24.83 0.22 -31.29 16 14 H 0.09 4.37 5.69 -2.91 -0.02 4.35 16 15 C 0.03 1.88 5.50 85.31 0.47 2.35 16 16 N -0.82 -49.07 11.84 21.84 0.26 -48.81 16 17 Si 0.99 40.52 29.56 68.60 2.03 42.55 16 18 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 21 H 0.06 2.01 7.23 -2.38 -0.02 1.99 16 22 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.12 6.17 5.37 -40.88 -0.22 5.95 16 25 H 0.09 3.37 5.79 -2.39 -0.01 3.36 16 26 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.11 2.85 6.90 -2.39 -0.02 2.83 16 29 H 0.04 1.55 5.89 -2.39 -0.01 1.54 16 30 H 0.12 3.14 6.95 -2.39 -0.02 3.13 16 31 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 3.47 5.39 -2.38 -0.01 3.46 16 34 H 0.06 2.10 7.67 -2.39 -0.02 2.08 16 35 H 0.27 14.86 8.29 -92.71 -0.77 14.09 16 Total: -1.00 -69.91 272.97 3.37 -66.53 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.89 Total: 27.09 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 3.89 Total: -5.56 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.85 Total: -79.58 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -1.59 Total: -51.02 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -69.91 3.37 -66.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890589732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.002 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds