Wall clock time and date at job start Sun Mar 29 2020 22:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47180 * 269.99898 * 3 2 1 5 5 H 1.48503 * 109.46903 * 29.99877 * 3 2 1 6 6 H 1.48498 * 109.47152 * 149.99643 * 3 2 1 7 7 C 1.37876 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00505 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99904 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 16 16 C 1.52998 * 119.81152 * 250.98766 * 15 14 12 17 17 C 1.52997 * 60.65318 * 247.68890 * 16 15 14 18 18 H 1.09000 * 120.25532 * 112.14012 * 17 16 15 19 19 C 1.54489 * 118.06310 * 269.59286 * 17 16 15 20 20 O 1.44417 * 104.80202 * 86.82679 * 19 17 16 21 21 C 1.43869 * 105.57205 * 319.94291 * 20 19 17 22 22 H 0.96996 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47154 * 60.00159 * 9 7 2 24 24 H 1.09003 * 109.46515 * 299.99635 * 9 7 2 25 25 H 1.09004 * 109.47131 * 59.99662 * 10 9 7 26 26 H 1.09000 * 109.47504 * 299.99966 * 10 9 7 27 27 H 1.09004 * 109.47066 * 60.00025 * 11 10 9 28 28 H 1.08994 * 109.47405 * 299.99855 * 11 10 9 29 29 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 30 30 H 1.08998 * 117.42897 * 355.36352 * 16 15 14 31 31 H 1.09001 * 117.43428 * 140.00770 * 16 15 14 32 32 H 1.08999 * 110.37089 * 205.66276 * 19 17 16 33 33 H 1.08998 * 110.37260 * 327.99150 * 19 17 16 34 34 H 1.09006 * 109.55295 * 281.17183 * 21 20 19 35 35 H 1.08995 * 110.92064 * 159.01843 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6365 0.0022 12 6 6.0538 -4.0574 0.0040 13 8 5.2657 -4.9793 0.0047 14 7 7.3789 -4.3037 -0.0014 15 6 7.8672 -5.6848 -0.0057 16 6 8.5332 -6.2601 1.2459 17 6 9.3733 -6.0296 -0.0118 18 1 10.1476 -5.2625 -0.0221 19 6 9.4896 -7.1856 -1.0301 20 8 8.3437 -7.0316 -1.8955 21 6 7.2538 -6.6636 -1.0315 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8751 -0.6805 -0.8889 25 1 3.6585 -3.1510 -0.8875 26 1 3.6579 -3.1498 0.8925 27 1 5.9148 -2.1220 0.8918 28 1 5.9148 -2.1235 -0.8881 29 1 8.0092 -3.5664 -0.0022 30 1 8.6913 -5.5841 2.0862 31 1 8.2982 -7.2909 1.5110 32 1 10.4126 -7.0954 -1.6028 33 1 9.4522 -8.1473 -0.5184 34 1 6.8720 -7.5516 -0.5274 35 1 6.4589 -6.1745 -1.5944 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894179646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:51 Heat of formation + Delta-G solvation = -59.940251 kcal Electronic energy + Delta-G solvation = -16674.834899 eV Core-core repulsion = 13866.607253 eV Total energy + Delta-G solvation = -2808.227646 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.91247 -39.01924 -35.52367 -34.30605 -33.01902 -32.01822 -29.00297 -28.05711 -25.66816 -24.04877 -21.86090 -21.02392 -19.98140 -19.78161 -17.52203 -16.72089 -16.47553 -15.92265 -15.63052 -15.31676 -14.76337 -14.23870 -13.85340 -13.63537 -13.44045 -12.80151 -12.64823 -12.35932 -11.99649 -11.66162 -11.50027 -11.16401 -11.00397 -10.85534 -10.78371 -10.01751 -9.91334 -9.85086 -9.70380 -9.43952 -9.13472 -9.00402 -8.50901 -6.00488 -3.98353 2.69512 2.90418 3.10235 3.31675 3.38752 3.41386 3.78518 4.06017 4.15644 4.47191 4.57004 4.67536 4.81496 5.08302 5.24713 5.31158 5.32752 5.34374 5.50147 5.53318 5.56732 5.63883 5.73606 6.06999 6.37972 6.45900 6.54849 6.67683 6.91427 7.36269 7.44532 7.45302 7.82642 8.31218 8.59327 9.06240 9.61473 11.13244 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.056993 B = 0.004046 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.173478 B = 6918.311902 C = 7089.764186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.140 4.140 12 C 0.517 3.483 13 O -0.527 6.527 14 N -0.701 5.701 15 C 0.070 3.930 16 C -0.139 4.139 17 C -0.198 4.198 18 H 0.125 0.875 19 C 0.073 3.927 20 O -0.371 6.371 21 C 0.085 3.915 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.011 0.989 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.402 0.598 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.515 -10.636 0.835 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.180 4.180 12 C 0.305 3.695 13 O -0.402 6.402 14 N -0.354 5.354 15 C -0.018 4.018 16 C -0.178 4.178 17 C -0.218 4.218 18 H 0.143 0.857 19 C -0.004 4.004 20 O -0.290 6.290 21 C 0.008 3.992 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.029 0.971 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.238 0.762 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 21.732 -11.198 0.574 24.455 hybrid contribution 0.823 1.484 0.330 1.728 sum 22.555 -9.714 0.904 24.575 Atomic orbital electron populations 1.69920 1.06309 1.26803 1.51321 1.25053 0.94744 0.99153 0.94699 0.86758 0.80291 0.83651 0.78421 1.20335 1.21441 1.19082 1.21162 0.89508 0.94559 1.50469 0.90917 1.19609 0.97355 0.92124 0.96111 1.21274 0.89008 0.99628 1.02627 1.21879 1.00822 0.91448 1.03827 1.21253 0.80930 0.92808 0.74472 1.90690 1.54953 1.46585 1.47929 1.45335 1.07694 1.05340 1.77061 1.22404 0.93313 0.85989 1.00142 1.23596 0.99325 1.02930 0.91984 1.24661 0.94450 1.02276 1.00365 0.85662 1.22927 0.90648 0.95903 0.90934 1.89112 1.18833 1.89818 1.31222 1.22877 0.89747 0.95859 0.90704 0.92783 0.96673 0.97071 0.92012 0.91998 0.89276 0.89209 0.76237 0.87452 0.87920 0.88371 0.91646 0.91053 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.09 -1.79 4.44 -26.74 -0.12 -1.91 16 11 C -0.14 -2.12 5.70 -27.88 -0.16 -2.27 16 12 C 0.52 7.83 7.55 -10.98 -0.08 7.75 16 13 O -0.53 -9.96 14.37 5.55 0.08 -9.88 16 14 N -0.70 -8.02 5.67 -46.16 -0.26 -8.28 16 15 C 0.07 0.77 3.16 -130.25 -0.41 0.36 16 16 C -0.14 -1.18 10.07 -26.73 -0.27 -1.45 16 17 C -0.20 -1.57 7.21 -89.05 -0.64 -2.22 16 18 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 19 C 0.07 0.60 7.45 37.94 0.28 0.88 16 20 O -0.37 -4.49 11.62 -35.23 -0.41 -4.90 16 21 C 0.09 1.07 6.53 37.94 0.25 1.31 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 24 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 25 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 26 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 27 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.40 3.40 8.83 -40.82 -0.36 3.04 16 30 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.11 1.61 6.89 -51.93 -0.36 1.25 16 LS Contribution 293.24 15.07 4.42 4.42 Total: -1.00 -34.13 293.24 -7.06 -41.19 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.29 Total: -0.30 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.70 Total: -11.70 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.51 Total: -35.92 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.33 Total: -14.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.13 -7.06 -41.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894179646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.748 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds