Wall clock time and date at job start Sun Mar 29 2020 23:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47486 * 333.17933 * 3 2 1 5 5 C 1.36933 * 120.00003 * 95.73236 * 4 3 2 6 6 H 1.08001 * 119.99611 * 163.86414 * 5 4 3 7 7 C 1.38810 * 120.00293 * 343.85822 * 5 4 3 8 8 N 1.31615 * 119.99853 * 336.74461 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 156.73862 * 7 5 4 10 10 H 1.48502 * 109.47554 * 265.79350 * 9 7 5 11 11 H 1.48503 * 109.47180 * 25.79447 * 9 7 5 12 12 H 1.48508 * 109.46827 * 145.79328 * 9 7 5 13 13 C 1.46502 * 119.99880 * 275.73326 * 4 3 2 14 14 C 1.52999 * 109.46945 * 270.00182 * 13 4 3 15 15 O 1.42900 * 109.47395 * 64.99830 * 14 13 4 16 16 C 1.42898 * 114.00129 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.43779 * 328.91521 * 16 15 14 18 18 C 1.54811 * 110.49176 * 206.22325 * 16 15 14 19 19 C 1.54992 * 102.09050 * 220.44741 * 18 16 15 20 20 O 1.44378 * 103.49521 * 37.01899 * 19 18 16 21 21 C 1.43738 * 106.97360 * 319.93949 * 20 19 18 22 22 H 4.40643 * 5.51446 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.46702 * 213.17661 * 3 2 1 24 24 H 1.08999 * 109.46693 * 93.17832 * 3 2 1 25 25 H 0.96998 * 119.99949 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.47003 * 30.00004 * 13 4 3 27 27 H 1.08992 * 109.47067 * 150.00069 * 13 4 3 28 28 H 1.09006 * 109.46956 * 184.99803 * 14 13 4 29 29 H 1.08998 * 109.47336 * 304.99731 * 14 13 4 30 30 H 1.09000 * 110.90161 * 338.64050 * 18 16 15 31 31 H 1.08991 * 110.90955 * 102.24507 * 18 16 15 32 32 H 1.09004 * 110.61837 * 278.51431 * 19 18 16 33 33 H 1.09001 * 110.62013 * 155.52485 * 19 18 16 34 34 H 1.08996 * 109.87893 * 267.08570 * 21 20 19 35 35 H 1.09005 * 109.87462 * 145.93433 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2317 0.6232 5 6 3.4754 -2.3047 -0.1564 6 1 4.0707 -3.1053 0.2571 7 6 3.0552 -2.3636 -1.4781 8 7 1.9971 -1.6821 -1.8632 9 14 3.9915 -3.4099 -2.7101 10 1 4.9888 -2.5677 -3.4181 11 1 4.6896 -4.5093 -1.9964 12 1 3.0404 -3.9846 -3.6952 13 6 3.2597 -1.3160 2.0804 14 6 4.6561 -0.8527 2.5004 15 8 4.8126 0.5327 2.1871 16 6 6.0892 1.0682 2.5414 17 1 6.4861 0.5572 3.4186 18 6 5.9855 2.5913 2.7987 19 6 7.2833 3.1212 2.1375 20 8 7.4313 2.2863 0.9689 21 6 7.0704 0.9508 1.3590 22 1 -1.0498 -0.0003 0.0004 23 1 3.0089 0.8610 0.5624 24 1 3.0092 0.0578 -1.0261 25 1 1.7037 -1.7229 -2.7868 26 1 2.5094 -0.6775 2.5469 27 1 3.1080 -2.3473 2.3990 28 1 4.7799 -0.9988 3.5735 29 1 5.4077 -1.4333 1.9656 30 1 5.1033 3.0085 2.3133 31 1 5.9779 2.8056 3.8673 32 1 8.1338 2.9974 2.8079 33 1 7.1686 4.1665 1.8505 34 1 7.9598 0.4020 1.6685 35 1 6.5877 0.4392 0.5263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930314086.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:01 Heat of formation + Delta-G solvation = -25.771191 kcal Electronic energy + Delta-G solvation = -17483.083810 eV Core-core repulsion = 14676.337845 eV Total energy + Delta-G solvation = -2806.745964 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53692 -38.58028 -37.25440 -33.57378 -33.38769 -32.12746 -30.10100 -29.24017 -27.85558 -25.15834 -23.66361 -22.28247 -22.14431 -19.34973 -18.29248 -17.94796 -17.48740 -17.09371 -16.53888 -15.95086 -15.82676 -15.39125 -15.19626 -14.74294 -14.27908 -13.73582 -13.48675 -13.36970 -13.10911 -12.76342 -12.63668 -12.49443 -12.36808 -12.20947 -12.13050 -11.87492 -11.54625 -10.84686 -10.77958 -10.67178 -10.30512 -10.24744 -8.90301 -7.81701 -5.20951 1.46252 1.49879 1.56609 2.32930 2.53340 2.59682 2.77762 3.05850 3.29663 3.62406 3.82484 3.94957 4.08029 4.14749 4.26442 4.36679 4.47503 4.52614 4.61304 4.70389 4.80886 4.82644 4.92017 5.00166 5.10462 5.12812 5.19974 5.37411 5.64829 5.70093 5.89437 6.30122 6.47793 7.12111 7.35375 7.86355 8.31231 9.20511 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.007527 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.167518 B = 3719.293066 C = 4264.823952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.134 4.134 3 C 0.281 3.719 4 N -0.595 5.595 5 C -0.267 4.267 6 H 0.079 0.921 7 C -0.049 4.049 8 N -0.915 5.915 9 Si 0.957 3.043 10 H -0.292 1.292 11 H -0.267 1.267 12 H -0.301 1.301 13 C 0.144 3.856 14 C 0.053 3.947 15 O -0.384 6.384 16 C 0.051 3.949 17 H 0.097 0.903 18 C -0.148 4.148 19 C 0.043 3.957 20 O -0.406 6.406 21 C 0.023 3.977 22 H 0.224 0.776 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.245 0.755 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.902 6.720 11.837 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.137 4.137 3 C 0.155 3.845 4 N -0.315 5.315 5 C -0.396 4.396 6 H 0.096 0.904 7 C -0.245 4.245 8 N -0.560 5.560 9 Si 0.786 3.214 10 H -0.219 1.219 11 H -0.192 1.192 12 H -0.228 1.228 13 C 0.018 3.982 14 C -0.026 4.026 15 O -0.304 6.304 16 C -0.007 4.007 17 H 0.115 0.885 18 C -0.185 4.185 19 C -0.032 4.032 20 O -0.325 6.325 21 C -0.054 4.054 22 H 0.241 0.759 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.794 6.859 11.410 15.956 hybrid contribution -0.021 -0.985 -0.946 1.366 sum 8.774 5.875 10.464 14.866 Atomic orbital electron populations 1.25021 0.96359 1.04675 1.05509 1.24871 0.96337 0.96434 0.96086 1.17547 0.82392 0.87447 0.97116 1.44116 1.74930 1.11107 1.01381 1.19517 1.26111 1.00755 0.93240 0.90350 1.25534 0.97369 1.01365 1.00242 1.70320 1.22753 1.46880 1.16048 0.85411 0.78036 0.78555 0.79401 1.21915 1.19167 1.22792 1.21006 0.94220 0.99337 0.83616 1.23276 0.99202 0.81499 0.98595 1.88025 1.33011 1.25184 1.84154 1.23669 0.84684 0.96057 0.96314 0.88543 1.23223 0.99234 0.92666 1.03390 1.23775 0.96511 0.96094 0.86860 1.88860 1.89128 1.19553 1.34984 1.23767 0.98165 0.84855 0.98594 0.75944 0.92355 0.92388 0.94552 0.93586 0.91273 0.91043 0.94273 0.91063 0.86889 0.89753 0.87527 0.90444 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.94 19.25 74.32 1.43 -12.51 16 2 C -0.13 -6.93 11.63 31.13 0.36 -6.57 16 3 C 0.28 14.35 5.27 84.58 0.45 14.80 16 4 N -0.59 -29.61 2.46 -712.57 -1.75 -31.36 16 5 C -0.27 -14.42 9.65 84.03 0.81 -13.61 16 6 H 0.08 4.06 7.93 -2.91 -0.02 4.04 16 7 C -0.05 -2.74 4.83 84.86 0.41 -2.33 16 8 N -0.91 -54.33 9.54 21.65 0.21 -54.13 16 9 Si 0.96 45.47 29.61 68.60 2.03 47.50 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 C 0.14 5.71 6.08 86.38 0.53 6.24 16 14 C 0.05 1.71 6.14 71.98 0.44 2.15 16 15 O -0.38 -13.00 8.70 -148.98 -1.30 -14.30 16 16 C 0.05 1.31 3.51 31.59 0.11 1.42 16 17 H 0.10 1.92 7.86 -2.39 -0.02 1.90 16 18 C -0.15 -3.13 6.90 31.89 0.22 -2.91 16 19 C 0.04 0.87 7.72 72.66 0.56 1.44 16 20 O -0.41 -12.21 11.52 -148.98 -1.72 -13.93 16 21 C 0.02 0.68 7.52 72.36 0.54 1.22 16 22 H 0.22 8.42 7.80 -4.43 -0.03 8.38 16 23 H 0.06 2.78 7.03 -2.39 -0.02 2.77 16 24 H 0.06 3.33 6.40 -2.39 -0.02 3.31 16 25 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.05 1.80 8.07 -2.39 -0.02 1.79 16 27 H 0.07 2.63 8.04 -2.39 -0.02 2.61 16 28 H 0.07 1.78 8.10 -2.38 -0.02 1.76 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 2.31 7.97 -2.38 -0.02 2.29 16 Total: -1.00 -67.50 297.97 4.39 -63.11 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.05 Total: 13.78 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.86 Total: -10.67 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -1.54 Total: -85.49 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -3.01 Total: -28.23 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.50 4.39 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930314086.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.339 kcal (2) G-P(sol) polarization free energy of solvation -67.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds