Wall clock time and date at job start Sun Mar 29 2020 22:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48498 * 109.46839 * 239.99981 * 3 2 1 5 5 H 1.48501 * 109.46951 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47197 * 119.99809 * 3 2 1 7 7 C 1.37878 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47039 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47039 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00015 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00049 * 180.02562 * 11 10 9 14 14 C 1.47356 * 136.28270 * 0.02712 * 13 11 10 15 15 C 1.53749 * 88.33539 * 154.15401 * 14 13 11 16 16 C 1.45526 * 136.28734 * 179.97438 * 13 11 10 17 17 C 1.54110 * 116.24980 * 86.91832 * 16 13 11 18 18 C 1.54626 * 102.00826 * 264.16102 * 17 16 13 19 19 O 1.43341 * 107.72052 * 339.91402 * 18 17 16 20 20 C 1.43926 * 110.07814 * 358.43632 * 19 18 17 21 21 H 0.96998 * 119.99670 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47132 * 59.99923 * 9 7 2 23 23 H 1.09000 * 109.47022 * 300.00481 * 9 7 2 24 24 H 1.09004 * 109.47092 * 60.00057 * 10 9 7 25 25 H 1.09004 * 109.47298 * 300.00010 * 10 9 7 26 26 H 1.08999 * 113.41413 * 269.02608 * 14 13 11 27 27 H 1.09007 * 113.41026 * 39.28320 * 14 13 11 28 28 H 1.09006 * 114.30910 * 271.30745 * 15 14 13 29 29 H 1.09009 * 114.30827 * 138.32348 * 15 14 13 30 30 H 1.09009 * 110.90118 * 146.00692 * 17 16 13 31 31 H 1.09005 * 110.97876 * 22.35357 * 17 16 13 32 32 H 1.09002 * 109.82213 * 220.33772 * 18 17 16 33 33 H 1.08998 * 109.81782 * 99.48103 * 18 17 16 34 34 H 1.09000 * 110.33069 * 141.79596 * 20 19 18 35 35 H 1.08997 * 110.33310 * 264.03463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1656 -6.1344 0.0003 14 6 3.5801 -6.5476 0.0018 15 6 3.1486 -7.8629 0.6709 16 6 1.8206 -7.5482 0.0004 17 6 1.5873 -8.1929 -1.3797 18 6 0.0499 -8.1063 -1.5195 19 8 -0.4989 -7.9383 -0.2060 20 6 0.5548 -7.9460 0.7744 21 1 -0.4849 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8720 -3.6043 0.8906 25 1 2.8720 -3.6043 -0.8895 26 1 3.9922 -6.6850 -0.9979 27 1 4.2122 -5.9260 0.6361 28 1 3.1215 -7.8245 1.7599 29 1 3.6492 -8.7496 0.2816 30 1 1.9207 -9.2308 -1.3855 31 1 2.0823 -7.6224 -2.1657 32 1 -0.3331 -9.0242 -1.9655 33 1 -0.2170 -7.2532 -2.1433 34 1 0.3467 -7.2193 1.5596 35 1 0.6687 -8.9429 1.2001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162177319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:58 Heat of formation + Delta-G solvation = -48.645490 kcal Electronic energy + Delta-G solvation = -17427.708998 eV Core-core repulsion = 14619.971130 eV Total energy + Delta-G solvation = -2807.737868 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15643 -38.14900 -37.04450 -33.43500 -31.38423 -30.65954 -29.51545 -28.45682 -25.63730 -23.10268 -22.68071 -22.25805 -20.28115 -18.08851 -16.97604 -16.58323 -15.95532 -15.74477 -15.37579 -14.85693 -14.44364 -14.27281 -13.79540 -13.37157 -13.01789 -12.65728 -12.23961 -12.17799 -12.08955 -11.65207 -11.44847 -11.23096 -11.14634 -10.90416 -10.61135 -10.53458 -9.94627 -9.64583 -9.43547 -9.15319 -8.95762 -8.48976 -8.30528 -5.94869 -3.99728 2.98664 3.22546 3.34890 3.39544 3.41351 3.79243 4.24378 4.38377 4.47411 4.72196 4.83139 4.91988 5.07696 5.13813 5.18157 5.36073 5.39685 5.48050 5.56530 5.61950 5.73421 5.75440 5.90701 6.03223 6.16503 6.23680 6.36580 6.90884 7.07764 7.74704 7.86787 8.04250 8.08901 8.39130 8.77464 9.08462 9.63633 11.16037 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041794 B = 0.005367 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.794551 B = 5215.908345 C = 5612.530617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.120 4.120 11 C 0.535 3.465 12 O -0.513 6.513 13 N -0.641 5.641 14 C 0.102 3.898 15 C -0.139 4.139 16 C 0.120 3.880 17 C -0.153 4.153 18 C 0.056 3.944 19 O -0.371 6.371 20 C 0.059 3.941 21 H 0.262 0.738 22 H 0.023 0.977 23 H 0.024 0.976 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.669 -18.848 -0.656 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.160 4.160 11 C 0.327 3.673 12 O -0.386 6.386 13 N -0.380 5.380 14 C -0.022 4.022 15 C -0.176 4.176 16 C 0.033 3.967 17 C -0.192 4.192 18 C -0.021 4.021 19 O -0.290 6.290 20 C -0.019 4.019 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.459 -18.422 -0.615 19.884 hybrid contribution 0.756 0.918 -0.210 1.207 sum 8.216 -17.504 -0.825 19.354 Atomic orbital electron populations 1.69996 1.06061 1.26717 1.50007 1.25028 0.94826 0.99216 0.95279 0.86640 0.79533 0.83156 0.78523 1.20267 1.21250 1.20240 1.21164 0.92848 0.90980 1.51631 0.92694 1.18912 0.93159 0.89295 0.98658 1.21821 1.00625 0.91241 1.02294 1.21348 0.88109 0.83573 0.74287 1.90739 1.13862 1.86294 1.47695 1.49779 1.08391 1.03851 1.75934 1.22919 0.84824 0.93819 1.00607 1.23152 0.94840 0.98354 1.01292 1.22412 0.95955 0.83153 0.95140 1.23184 0.97351 1.01539 0.97150 1.23075 0.91880 1.00993 0.86132 1.88512 1.30936 1.94640 1.14887 1.23310 0.85578 1.00517 0.92447 0.92865 0.95849 0.95765 0.90401 0.90487 0.90064 0.89975 0.88296 0.89114 0.89295 0.89561 0.91672 0.91346 0.89338 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.85 13.29 55.43 0.74 -27.11 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.23 9.11 -34.44 -0.31 -15.55 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.12 -2.55 5.48 -27.88 -0.15 -2.70 16 11 C 0.53 10.99 8.02 -10.98 -0.09 10.90 16 12 O -0.51 -12.83 16.27 5.56 0.09 -12.74 16 13 N -0.64 -9.76 3.53 -176.39 -0.62 -10.38 16 14 C 0.10 1.02 8.25 -11.04 -0.09 0.93 16 15 C -0.14 -1.14 7.84 -26.82 -0.21 -1.35 16 16 C 0.12 1.47 1.19 -139.78 -0.17 1.31 16 17 C -0.15 -1.63 6.36 -25.30 -0.16 -1.79 16 18 C 0.06 0.76 7.81 38.01 0.30 1.05 16 19 O -0.37 -6.27 11.37 -35.23 -0.40 -6.68 16 20 C 0.06 0.82 6.79 37.48 0.25 1.08 16 21 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 24 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.50 8.13 -51.92 -0.42 0.08 16 30 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 295.82 15.07 4.46 4.46 Total: -1.00 -35.86 295.82 -7.06 -42.93 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -5.45 Total: -3.76 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.85 Total: -3.58 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.11 Total: -37.49 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.31 Total: -19.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.86 -7.06 -42.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162177319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.719 kcal (2) G-P(sol) polarization free energy of solvation -35.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds