Wall clock time and date at job start Sun Mar 29 2020 22:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48498 * 109.46839 * 239.99981 * 3 2 1 5 5 H 1.48501 * 109.46951 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47197 * 119.99809 * 3 2 1 7 7 C 1.37878 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47039 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47039 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00015 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00049 * 180.02562 * 11 10 9 14 14 C 1.47356 * 136.28270 * 0.02712 * 13 11 10 15 15 C 1.53749 * 88.33539 * 154.15401 * 14 13 11 16 16 C 1.45526 * 136.28734 * 179.97438 * 13 11 10 17 17 C 1.54110 * 116.24980 * 86.91832 * 16 13 11 18 18 C 1.54626 * 102.00826 * 264.16102 * 17 16 13 19 19 O 1.43341 * 107.72052 * 339.91402 * 18 17 16 20 20 C 1.43926 * 110.07814 * 358.43632 * 19 18 17 21 21 H 0.96998 * 119.99670 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47132 * 59.99923 * 9 7 2 23 23 H 1.09000 * 109.47022 * 300.00481 * 9 7 2 24 24 H 1.09004 * 109.47092 * 60.00057 * 10 9 7 25 25 H 1.09004 * 109.47298 * 300.00010 * 10 9 7 26 26 H 1.08999 * 113.41413 * 269.02608 * 14 13 11 27 27 H 1.09007 * 113.41026 * 39.28320 * 14 13 11 28 28 H 1.09006 * 114.30910 * 271.30745 * 15 14 13 29 29 H 1.09009 * 114.30827 * 138.32348 * 15 14 13 30 30 H 1.09009 * 110.90118 * 146.00692 * 17 16 13 31 31 H 1.09005 * 110.97876 * 22.35357 * 17 16 13 32 32 H 1.09002 * 109.82213 * 220.33772 * 18 17 16 33 33 H 1.08998 * 109.81782 * 99.48103 * 18 17 16 34 34 H 1.09000 * 110.33069 * 141.79596 * 20 19 18 35 35 H 1.08997 * 110.33310 * 264.03463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1656 -6.1344 0.0003 14 6 3.5801 -6.5476 0.0018 15 6 3.1486 -7.8629 0.6709 16 6 1.8206 -7.5482 0.0004 17 6 1.5873 -8.1929 -1.3797 18 6 0.0499 -8.1063 -1.5195 19 8 -0.4989 -7.9383 -0.2060 20 6 0.5548 -7.9460 0.7744 21 1 -0.4849 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8720 -3.6043 0.8906 25 1 2.8720 -3.6043 -0.8895 26 1 3.9922 -6.6850 -0.9979 27 1 4.2122 -5.9260 0.6361 28 1 3.1215 -7.8245 1.7599 29 1 3.6492 -8.7496 0.2816 30 1 1.9207 -9.2308 -1.3855 31 1 2.0823 -7.6224 -2.1657 32 1 -0.3331 -9.0242 -1.9655 33 1 -0.2170 -7.2532 -2.1433 34 1 0.3467 -7.2193 1.5596 35 1 0.6687 -8.9429 1.2001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162177319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:57 Heat of formation + Delta-G solvation = -75.686707 kcal Electronic energy + Delta-G solvation = -17428.881593 eV Core-core repulsion = 14619.971130 eV Total energy + Delta-G solvation = -2808.910464 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20995 -39.63717 -38.24444 -35.59809 -33.19384 -31.94946 -30.73038 -29.46372 -27.62834 -24.21617 -23.93938 -23.49847 -21.84081 -19.36082 -18.71625 -17.85419 -17.50048 -16.89981 -16.58365 -16.51053 -16.18881 -15.67885 -14.93192 -14.53274 -14.28425 -14.14515 -14.08695 -13.51163 -13.18027 -13.00189 -12.79405 -12.66686 -12.50021 -12.39057 -12.06540 -11.97670 -11.67889 -11.48687 -11.34433 -10.65378 -10.59506 -10.51302 -9.67813 -8.20644 -6.36190 1.39957 1.45429 1.53315 1.64056 1.87080 2.41121 2.80893 3.11838 3.39343 3.45805 3.74690 3.82161 3.94797 4.13049 4.20071 4.37570 4.40614 4.48675 4.56914 4.64360 4.70645 4.75354 4.77974 4.91683 4.96684 5.01053 5.25319 5.30759 5.44767 5.56117 5.80149 6.02834 6.12852 6.73719 6.83864 7.26439 7.34740 8.92133 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041794 B = 0.005367 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.794551 B = 5215.908345 C = 5612.530617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.044 3.956 10 C -0.107 4.107 11 C 0.530 3.470 12 O -0.579 6.579 13 N -0.647 5.647 14 C 0.094 3.906 15 C -0.109 4.109 16 C 0.107 3.893 17 C -0.139 4.139 18 C 0.045 3.955 19 O -0.413 6.413 20 C 0.050 3.950 21 H 0.263 0.737 22 H -0.022 1.022 23 H -0.021 1.021 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.030 0.970 34 H 0.051 0.949 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.707 -20.566 -0.819 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.007 3.993 10 C -0.146 4.146 11 C 0.322 3.678 12 O -0.458 6.458 13 N -0.383 5.383 14 C -0.027 4.027 15 C -0.146 4.146 16 C 0.021 3.979 17 C -0.177 4.177 18 C -0.032 4.032 19 O -0.333 6.333 20 C -0.026 4.026 21 H 0.072 0.928 22 H -0.004 1.004 23 H -0.002 1.002 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.585 -20.206 -0.778 23.305 hybrid contribution -0.539 1.349 -0.156 1.461 sum 11.046 -18.857 -0.934 21.874 Atomic orbital electron populations 1.70195 1.08487 1.27987 1.51260 1.26207 0.95737 1.04172 0.94424 0.85307 0.78000 0.76943 0.79584 1.18539 1.21253 1.18496 1.21655 0.93964 0.91456 1.51204 0.90512 1.18671 0.93625 0.92620 0.94397 1.21525 0.99096 0.89771 1.04238 1.21029 0.87242 0.85187 0.74340 1.90708 1.16471 1.87522 1.51132 1.49759 1.11438 1.03832 1.73274 1.23397 0.81850 0.94681 1.02766 1.23170 0.91001 0.98957 1.01461 1.22930 0.97311 0.81083 0.96589 1.23223 0.94547 1.04111 0.95803 1.23255 0.94763 1.00674 0.84480 1.88459 1.33237 1.94953 1.16639 1.23495 0.85961 1.01613 0.91548 0.92790 1.00355 1.00248 0.88229 0.88353 0.87431 0.88855 0.87691 0.84419 0.84550 0.89296 0.88826 0.95120 0.93098 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.41 13.29 21.45 0.28 -61.13 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.98 45.05 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 9 C 0.04 2.61 4.26 29.85 0.13 2.74 16 10 C -0.11 -4.61 5.48 29.85 0.16 -4.45 16 11 C 0.53 22.66 8.02 87.66 0.70 23.36 16 12 O -0.58 -31.47 16.27 -3.02 -0.05 -31.52 16 13 N -0.65 -18.96 3.53 -830.37 -2.93 -21.89 16 14 C 0.09 1.49 8.25 81.38 0.67 2.16 16 15 C -0.11 -1.21 7.84 30.54 0.24 -0.97 16 16 C 0.11 2.34 1.19 -1.03 0.00 2.34 16 17 C -0.14 -2.49 6.36 31.52 0.20 -2.28 16 18 C 0.04 1.20 7.81 72.54 0.57 1.76 16 19 O -0.41 -14.45 11.37 -148.98 -1.69 -16.14 16 20 C 0.05 1.39 6.79 72.19 0.49 1.88 16 21 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 22 H -0.02 -1.46 8.10 -2.39 -0.02 -1.48 16 23 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 24 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 25 H 0.10 3.79 8.14 -2.38 -0.02 3.77 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.32 8.14 -2.38 -0.02 1.31 16 28 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.14 0.42 8.13 -2.38 -0.02 0.40 16 30 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -87.46 295.82 2.55 -84.90 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.06 Total: 3.96 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 3.86 Total: -5.26 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -2.64 Total: -83.01 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.74 Total: -47.66 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -87.46 2.55 -84.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162177319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.218 kcal (2) G-P(sol) polarization free energy of solvation -87.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds