Wall clock time and date at job start Sun Mar 29 2020 22:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47266 * 240.00228 * 3 2 1 5 5 H 1.48506 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47290 * 119.99801 * 3 2 1 7 7 C 1.37882 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46865 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99413 * 179.97438 * 11 10 9 14 14 C 1.47880 * 134.75345 * 359.95474 * 13 11 10 15 15 C 1.54211 * 86.40666 * 203.54114 * 14 13 11 16 16 C 1.46014 * 134.74319 * 180.02562 * 13 11 10 17 17 C 1.54172 * 116.13592 * 274.18396 * 16 13 11 18 18 C 1.55208 * 100.62943 * 97.05354 * 17 16 13 19 19 O 1.43778 * 105.39564 * 35.04313 * 18 17 16 20 20 C 1.43619 * 109.93470 * 335.74419 * 19 18 17 21 21 H 0.96996 * 120.00020 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47356 * 59.99774 * 9 7 2 23 23 H 1.09002 * 109.46714 * 300.00152 * 9 7 2 24 24 H 1.09002 * 109.46802 * 60.00078 * 10 9 7 25 25 H 1.08998 * 109.47018 * 299.99867 * 10 9 7 26 26 H 1.09002 * 113.72765 * 89.16527 * 14 13 11 27 27 H 1.09006 * 113.72080 * 317.91851 * 14 13 11 28 28 H 1.08998 * 113.82630 * 223.26660 * 15 14 13 29 29 H 1.09003 * 113.93334 * 91.70906 * 15 14 13 30 30 H 1.08998 * 111.25484 * 339.20408 * 17 16 13 31 31 H 1.08992 * 111.16827 * 214.86760 * 17 16 13 32 32 H 1.09002 * 110.27793 * 276.03549 * 18 17 16 33 33 H 1.09001 * 110.27192 * 154.04723 * 18 17 16 34 34 H 1.08997 * 109.90775 * 122.10465 * 20 19 18 35 35 H 1.09007 * 109.89865 * 243.34623 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4918 -4.9672 -0.0020 12 8 0.2790 -4.9672 -0.0030 13 7 2.1658 -6.1343 -0.0024 14 6 3.5959 -6.5108 -0.0033 15 6 3.1428 -7.8507 -0.6177 16 6 1.7817 -7.5430 -0.0034 17 6 1.5050 -8.1725 1.3765 18 6 -0.0414 -8.0559 1.4395 19 8 -0.4946 -8.2561 0.0897 20 6 0.5537 -7.9219 -0.8334 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5574 0.8880 24 1 2.8713 -3.6047 0.8891 25 1 2.8727 -3.6039 -0.8909 26 1 4.0244 -6.6084 0.9942 27 1 4.2081 -5.9062 -0.6725 28 1 3.6345 -8.7220 -0.1852 29 1 3.1418 -7.8595 -1.7077 30 1 1.9758 -7.5982 2.1743 31 1 1.8225 -9.2148 1.4044 32 1 -0.3316 -7.0663 1.7925 33 1 -0.4518 -8.8251 2.0937 34 1 0.7821 -8.7819 -1.4628 35 1 0.2485 -7.0773 -1.4514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162177328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:00 Heat of formation + Delta-G solvation = -54.087702 kcal Electronic energy + Delta-G solvation = -17405.343580 eV Core-core repulsion = 14597.369720 eV Total energy + Delta-G solvation = -2807.973860 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04664 -38.18111 -37.00877 -33.45438 -31.39226 -30.63554 -29.50053 -28.49682 -25.62870 -23.12517 -22.67765 -22.29858 -20.25614 -18.10448 -16.99177 -16.66080 -15.95753 -15.72273 -15.38733 -14.79357 -14.43336 -14.32065 -13.92577 -13.31591 -13.09319 -12.53258 -12.24451 -12.20480 -12.08406 -11.65660 -11.41537 -11.24080 -11.16292 -10.91353 -10.72710 -10.61595 -9.96230 -9.68237 -9.49989 -9.15508 -8.94053 -8.51903 -8.31800 -5.96039 -4.00919 2.93013 3.19062 3.34096 3.38816 3.40551 3.81510 4.24077 4.37552 4.46273 4.68147 4.82051 4.96186 5.09143 5.11170 5.21991 5.35527 5.38583 5.47752 5.59955 5.63547 5.75854 5.78301 5.92319 6.03451 6.16356 6.22049 6.35718 6.88835 7.00773 7.73372 7.85204 7.97876 8.06927 8.37778 8.73217 9.07179 9.62534 11.14879 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041818 B = 0.005332 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.415230 B = 5249.838625 C = 5649.730881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.121 4.121 11 C 0.531 3.469 12 O -0.522 6.522 13 N -0.641 5.641 14 C 0.104 3.896 15 C -0.137 4.137 16 C 0.123 3.877 17 C -0.154 4.154 18 C 0.055 3.945 19 O -0.379 6.379 20 C 0.059 3.941 21 H 0.262 0.738 22 H 0.024 0.976 23 H 0.023 0.977 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.560 -18.318 0.848 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.161 4.161 11 C 0.323 3.677 12 O -0.396 6.396 13 N -0.380 5.380 14 C -0.019 4.019 15 C -0.174 4.174 16 C 0.037 3.963 17 C -0.193 4.193 18 C -0.022 4.022 19 O -0.298 6.298 20 C -0.018 4.018 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.387 -18.012 0.785 19.483 hybrid contribution 0.735 1.080 0.178 1.319 sum 8.123 -16.931 0.963 18.803 Atomic orbital electron populations 1.69989 1.06069 1.26735 1.49998 1.25027 0.94825 0.99224 0.95262 0.86641 0.79539 0.83147 0.78533 1.20238 1.21244 1.20253 1.21165 0.92853 0.90980 1.51652 0.92689 1.18908 0.93156 0.89322 0.98623 1.21826 1.00640 0.91352 1.02301 1.21433 0.88162 0.84068 0.74075 1.90710 1.14040 1.86640 1.48164 1.50167 1.08053 1.03899 1.75845 1.23142 0.84171 0.93737 1.00874 1.23319 0.94270 0.98129 1.01728 1.22443 0.95842 0.82750 0.95283 1.23307 0.97499 1.01613 0.96845 1.23373 0.92528 1.01683 0.84589 1.88464 1.37607 1.88441 1.15328 1.23044 0.86012 1.00352 0.92429 0.92856 0.95797 0.95873 0.90451 0.90385 0.89894 0.89601 0.89476 0.88550 0.89433 0.89149 0.91654 0.89920 0.90416 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.12 -2.55 5.41 -27.88 -0.15 -2.70 16 11 C 0.53 10.74 7.91 -10.98 -0.09 10.65 16 12 O -0.52 -12.81 15.79 5.56 0.09 -12.72 16 13 N -0.64 -9.60 3.43 -162.56 -0.56 -10.16 16 14 C 0.10 1.03 8.54 -3.00 -0.03 1.00 16 15 C -0.14 -1.14 7.62 -26.39 -0.20 -1.34 16 16 C 0.12 1.52 1.20 -132.10 -0.16 1.36 16 17 C -0.15 -1.66 6.60 -24.95 -0.16 -1.83 16 18 C 0.05 0.75 7.79 38.33 0.30 1.05 16 19 O -0.38 -6.15 11.38 -35.23 -0.40 -6.55 16 20 C 0.06 0.84 7.01 37.15 0.26 1.10 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 22 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 23 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 25 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.08 1.35 7.47 -51.92 -0.39 0.96 16 LS Contribution 294.83 15.07 4.44 4.44 Total: -1.00 -35.37 294.83 -6.89 -42.26 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.42 Total: -3.37 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.76 Total: -3.68 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.18 Total: -37.18 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.31 Total: -19.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.37 -6.89 -42.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162177328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.829 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds