Wall clock time and date at job start Sun Mar 29 2020 22:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47266 * 240.00228 * 3 2 1 5 5 H 1.48506 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47290 * 119.99801 * 3 2 1 7 7 C 1.37882 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46865 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99413 * 179.97438 * 11 10 9 14 14 C 1.47880 * 134.75345 * 359.95474 * 13 11 10 15 15 C 1.54211 * 86.40666 * 203.54114 * 14 13 11 16 16 C 1.46014 * 134.74319 * 180.02562 * 13 11 10 17 17 C 1.54172 * 116.13592 * 274.18396 * 16 13 11 18 18 C 1.55208 * 100.62943 * 97.05354 * 17 16 13 19 19 O 1.43778 * 105.39564 * 35.04313 * 18 17 16 20 20 C 1.43619 * 109.93470 * 335.74419 * 19 18 17 21 21 H 0.96996 * 120.00020 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47356 * 59.99774 * 9 7 2 23 23 H 1.09002 * 109.46714 * 300.00152 * 9 7 2 24 24 H 1.09002 * 109.46802 * 60.00078 * 10 9 7 25 25 H 1.08998 * 109.47018 * 299.99867 * 10 9 7 26 26 H 1.09002 * 113.72765 * 89.16527 * 14 13 11 27 27 H 1.09006 * 113.72080 * 317.91851 * 14 13 11 28 28 H 1.08998 * 113.82630 * 223.26660 * 15 14 13 29 29 H 1.09003 * 113.93334 * 91.70906 * 15 14 13 30 30 H 1.08998 * 111.25484 * 339.20408 * 17 16 13 31 31 H 1.08992 * 111.16827 * 214.86760 * 17 16 13 32 32 H 1.09002 * 110.27793 * 276.03549 * 18 17 16 33 33 H 1.09001 * 110.27192 * 154.04723 * 18 17 16 34 34 H 1.08997 * 109.90775 * 122.10465 * 20 19 18 35 35 H 1.09007 * 109.89865 * 243.34623 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4918 -4.9672 -0.0020 12 8 0.2790 -4.9672 -0.0030 13 7 2.1658 -6.1343 -0.0024 14 6 3.5959 -6.5108 -0.0033 15 6 3.1428 -7.8507 -0.6177 16 6 1.7817 -7.5430 -0.0034 17 6 1.5050 -8.1725 1.3765 18 6 -0.0414 -8.0559 1.4395 19 8 -0.4946 -8.2561 0.0897 20 6 0.5537 -7.9219 -0.8334 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5574 0.8880 24 1 2.8713 -3.6047 0.8891 25 1 2.8727 -3.6039 -0.8909 26 1 4.0244 -6.6084 0.9942 27 1 4.2081 -5.9062 -0.6725 28 1 3.6345 -8.7220 -0.1852 29 1 3.1418 -7.8595 -1.7077 30 1 1.9758 -7.5982 2.1743 31 1 1.8225 -9.2148 1.4044 32 1 -0.3316 -7.0663 1.7925 33 1 -0.4518 -8.8251 2.0937 34 1 0.7821 -8.7819 -1.4628 35 1 0.2485 -7.0773 -1.4514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162177328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:00 Heat of formation + Delta-G solvation = -80.474588 kcal Electronic energy + Delta-G solvation = -17406.487801 eV Core-core repulsion = 14597.369720 eV Total energy + Delta-G solvation = -2809.118082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.11951 -39.64540 -38.20738 -35.60436 -33.20317 -31.90930 -30.73055 -29.51597 -27.61233 -24.16999 -23.94651 -23.63038 -21.79716 -19.36977 -18.72427 -17.89276 -17.55863 -16.88266 -16.64018 -16.52275 -16.07528 -15.71299 -14.99728 -14.58537 -14.39024 -14.18384 -13.97010 -13.44869 -13.13108 -13.03090 -12.79886 -12.69442 -12.50007 -12.32046 -12.12802 -11.97791 -11.71061 -11.64687 -11.36008 -10.77558 -10.59749 -10.46344 -9.70188 -8.20935 -6.36415 1.39898 1.45253 1.53122 1.62094 1.83627 2.40817 2.80429 3.11629 3.39739 3.42548 3.70264 3.77399 3.95249 4.11979 4.20542 4.37215 4.40263 4.49271 4.56685 4.63917 4.71359 4.73168 4.81151 4.90456 4.95282 5.01167 5.25220 5.28176 5.44518 5.55910 5.79881 5.91403 6.12670 6.68909 6.82828 7.23806 7.34483 8.91824 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041818 B = 0.005332 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.415230 B = 5249.838625 C = 5649.730881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.044 3.956 10 C -0.108 4.108 11 C 0.525 3.475 12 O -0.586 6.586 13 N -0.644 5.644 14 C 0.097 3.903 15 C -0.110 4.110 16 C 0.110 3.890 17 C -0.138 4.138 18 C 0.044 3.956 19 O -0.408 6.408 20 C 0.051 3.949 21 H 0.263 0.737 22 H -0.022 1.022 23 H -0.022 1.022 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.019 0.981 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.620 -19.948 1.095 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.007 3.993 10 C -0.148 4.148 11 C 0.317 3.683 12 O -0.466 6.466 13 N -0.380 5.380 14 C -0.023 4.023 15 C -0.147 4.147 16 C 0.024 3.976 17 C -0.176 4.176 18 C -0.032 4.032 19 O -0.328 6.328 20 C -0.025 4.025 21 H 0.072 0.928 22 H -0.003 1.003 23 H -0.003 1.003 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.117 0.883 28 H 0.150 0.850 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.038 0.962 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.529 -19.705 1.032 22.853 hybrid contribution -0.573 1.494 0.095 1.602 sum 10.956 -18.211 1.127 21.283 Atomic orbital electron populations 1.70187 1.08487 1.27989 1.51272 1.26202 0.95731 1.04166 0.94430 0.85313 0.78007 0.76963 0.79588 1.18523 1.21276 1.18510 1.21659 0.93975 0.91462 1.51184 0.90496 1.18670 0.93636 0.92649 0.94370 1.21535 0.99112 0.89839 1.04280 1.21154 0.87313 0.85667 0.74166 1.90682 1.16632 1.87802 1.51490 1.50230 1.10960 1.03636 1.73205 1.23636 0.81178 0.94457 1.03032 1.23305 0.90422 0.98732 1.02234 1.22927 0.97288 0.80895 0.96482 1.23340 0.94529 1.04057 0.95697 1.23513 0.95605 1.00165 0.83929 1.88428 1.39487 1.88201 1.16658 1.23192 0.86528 1.00251 0.92569 0.92793 1.00308 1.00341 0.88250 0.88213 0.87231 0.88346 0.85005 0.87741 0.88961 0.84743 0.96224 0.87129 0.86763 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.20 13.29 21.45 0.28 -60.91 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.98 44.88 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.55 -31.86 9.11 25.60 0.23 -31.63 16 8 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 9 C 0.04 2.59 4.26 29.85 0.13 2.72 16 10 C -0.11 -4.62 5.41 29.85 0.16 -4.46 16 11 C 0.53 22.11 7.91 87.66 0.69 22.80 16 12 O -0.59 -31.39 15.79 -3.03 -0.05 -31.44 16 13 N -0.64 -18.55 3.43 -786.61 -2.70 -21.25 16 14 C 0.10 1.51 8.54 86.30 0.74 2.25 16 15 C -0.11 -1.26 7.62 30.84 0.23 -1.02 16 16 C 0.11 2.44 1.20 3.68 0.00 2.45 16 17 C -0.14 -2.56 6.60 31.75 0.21 -2.35 16 18 C 0.04 1.21 7.79 72.74 0.57 1.77 16 19 O -0.41 -13.54 11.38 -148.98 -1.70 -15.24 16 20 C 0.05 1.45 7.01 71.98 0.50 1.96 16 21 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 22 H -0.02 -1.42 8.10 -2.39 -0.02 -1.44 16 23 H -0.02 -1.45 8.10 -2.39 -0.02 -1.46 16 24 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 25 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 26 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.13 0.51 8.12 -2.39 -0.02 0.49 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.11 2.29 8.08 -2.39 -0.02 2.27 16 35 H 0.03 1.25 7.47 -2.38 -0.02 1.24 16 Total: -1.00 -86.21 294.83 2.86 -83.35 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.06 Total: 4.10 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 3.93 Total: -5.52 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.41 Total: -82.16 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -1.74 Total: -46.68 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -86.21 2.86 -83.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162177328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.878 kcal (2) G-P(sol) polarization free energy of solvation -86.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds