Wall clock time and date at job start Sun Mar 29 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47360 * 270.00260 * 3 2 1 5 5 H 1.48505 * 109.47069 * 30.00437 * 3 2 1 6 6 H 1.48505 * 109.47051 * 149.99975 * 3 2 1 7 7 C 1.37880 * 119.99330 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85369 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.69594 * 231.42222 * 8 7 2 10 10 C 1.52955 * 109.40144 * 305.27439 * 9 8 7 11 11 H 1.08998 * 109.41949 * 303.49572 * 10 9 8 12 12 N 1.46507 * 109.41104 * 183.63220 * 10 9 8 13 13 C 1.34778 * 119.99658 * 155.00172 * 12 10 9 14 14 O 1.21275 * 120.00153 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99611 * 180.02562 * 13 12 10 16 16 O 1.42901 * 115.54996 * 9.32981 * 15 13 12 17 17 C 1.53000 * 117.49561 * 223.61914 * 15 13 12 18 18 C 1.53000 * 117.49614 * 154.99891 * 15 13 12 19 19 C 1.52965 * 109.81734 * 63.60162 * 10 9 8 20 20 C 1.51663 * 121.09677 * 180.16000 * 7 2 1 21 21 H 0.97006 * 119.99639 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.62649 * 111.60989 * 8 7 2 23 23 H 1.09001 * 109.62544 * 351.23335 * 8 7 2 24 24 H 1.08998 * 109.48072 * 65.25266 * 9 8 7 25 25 H 1.08999 * 109.48148 * 185.28557 * 9 8 7 26 26 H 0.96995 * 120.00146 * 335.00368 * 12 10 9 27 27 H 0.96698 * 113.99778 * 325.58216 * 16 15 13 28 28 H 1.09000 * 117.50043 * 0.02562 * 17 15 13 29 29 H 1.09002 * 117.49717 * 145.01995 * 17 15 13 30 30 H 1.08997 * 117.49998 * 214.97655 * 18 15 13 31 31 H 1.08995 * 117.49993 * 0.02562 * 18 15 13 32 32 H 1.08997 * 109.48290 * 56.37766 * 19 10 9 33 33 H 1.09003 * 109.47963 * 176.41794 * 19 10 9 34 34 H 1.09001 * 109.55834 * 8.85985 * 20 7 2 35 35 H 1.09000 * 109.59489 * 248.36146 * 20 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 6 1.2675 -2.5152 -0.0005 9 6 1.8191 -3.3853 1.1338 10 6 3.3359 -3.5142 0.9837 11 1 3.5695 -3.9192 -0.0009 12 7 3.8524 -4.4159 2.0164 13 6 5.0082 -5.0793 1.8149 14 8 5.6203 -4.9302 0.7786 15 6 5.5393 -6.0073 2.8770 16 8 4.6496 -6.2745 3.9629 17 6 7.0357 -5.9412 3.1888 18 6 6.4651 -7.1393 2.4272 19 6 3.9907 -2.1403 1.1367 20 6 3.5208 -1.2234 0.0031 21 1 -0.4850 0.8401 0.0004 22 1 1.4190 -3.0189 -0.9552 23 1 0.2031 -2.3406 0.1564 24 1 1.5867 -2.9225 2.0929 25 1 1.3637 -4.3745 1.0875 26 1 3.3627 -4.5355 2.8451 27 1 4.0893 -5.5248 4.2059 28 1 7.6360 -5.2263 2.6261 29 1 7.3419 -6.1014 4.2226 30 1 6.3960 -8.0877 2.9600 31 1 6.6905 -7.2126 1.3634 32 1 3.7069 -1.7070 2.0957 33 1 5.0746 -2.2472 1.0924 34 1 3.9048 -0.2160 0.1641 35 1 3.8813 -1.6072 -0.9513 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181530578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:35 Heat of formation + Delta-G solvation = -71.358982 kcal Electronic energy + Delta-G solvation = -17434.910728 eV Core-core repulsion = 14626.187928 eV Total energy + Delta-G solvation = -2808.722799 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.22332 -37.72594 -36.60687 -34.52919 -33.43656 -31.58298 -29.71999 -27.53812 -24.21429 -22.68789 -21.89794 -21.54879 -19.95352 -19.74356 -18.52551 -16.18731 -16.03861 -15.39653 -14.74909 -14.58042 -14.49104 -14.32436 -13.24045 -13.14297 -12.83157 -12.55348 -12.35578 -12.14349 -11.71318 -11.62109 -11.21705 -11.06832 -10.88136 -10.77123 -10.24251 -10.05418 -9.85903 -9.62880 -9.51452 -9.06377 -8.90976 -8.53456 -8.38496 -6.14010 -4.05344 2.48981 3.19324 3.25823 3.33757 3.34630 3.57459 3.83011 4.35349 4.65859 4.76996 4.79957 5.13448 5.43786 5.46504 5.65228 5.71254 5.81139 5.96554 6.11798 6.35610 6.41562 6.64860 6.66495 6.82544 6.88788 7.03794 7.10932 7.18657 7.38703 7.59346 7.65958 7.69867 7.83137 8.33276 8.34352 8.91400 9.50643 10.95342 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044405 B = 0.005810 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.408483 B = 4818.522803 C = 5073.833348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.489 4.489 8 C 0.012 3.988 9 C -0.115 4.115 10 C 0.154 3.846 11 H 0.080 0.920 12 N -0.719 5.719 13 C 0.525 3.475 14 O -0.532 6.532 15 C 0.019 3.981 16 O -0.521 6.521 17 C -0.169 4.169 18 C -0.131 4.131 19 C -0.112 4.112 20 C -0.020 4.020 21 H 0.265 0.735 22 H 0.006 0.994 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.037 0.963 26 H 0.391 0.609 27 H 0.381 0.619 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.448 -9.209 7.421 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.508 4.508 8 C -0.025 4.025 9 C -0.153 4.153 10 C 0.052 3.948 11 H 0.098 0.902 12 N -0.369 5.369 13 C 0.309 3.691 14 O -0.409 6.409 15 C -0.025 4.025 16 O -0.328 6.328 17 C -0.207 4.207 18 C -0.168 4.168 19 C -0.151 4.151 20 C -0.058 4.058 21 H 0.075 0.925 22 H 0.025 0.975 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.225 0.775 27 H 0.230 0.770 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.972 -9.549 6.637 14.687 hybrid contribution -0.172 1.399 0.619 1.539 sum 8.799 -8.150 7.256 14.018 Atomic orbital electron populations 1.69832 1.06124 1.26984 1.49851 1.24819 0.94712 0.98581 0.94485 0.86672 0.79964 0.83214 0.78598 1.20341 1.21622 1.18985 1.20113 0.89292 0.91434 1.49924 1.19343 0.98784 0.92781 0.91634 1.21944 0.92105 0.98772 1.02489 1.21143 0.94716 0.88821 0.90131 0.90219 1.46366 1.23407 1.45533 1.21613 1.19804 0.81579 0.80413 0.87268 1.90716 1.58116 1.65044 1.27036 1.21684 0.88576 1.02675 0.89596 1.86495 1.54321 1.41462 1.50474 1.23551 0.93455 1.01423 1.02239 1.23223 0.98051 0.93354 1.02192 1.21885 0.97219 0.95053 1.00976 1.19855 0.96634 0.95480 0.93816 0.92547 0.97521 0.92020 0.92627 0.94469 0.77505 0.77035 0.87433 0.87429 0.87442 0.86713 0.92997 0.94499 0.94554 0.96197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 12.73 55.43 0.71 -24.43 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.84 27.55 -169.99 -4.68 16.16 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.03 6.11 56.52 0.35 -5.69 16 7 C -0.49 -12.65 5.54 -98.73 -0.55 -13.20 16 8 C 0.01 0.30 5.95 -27.49 -0.16 0.14 16 9 C -0.11 -2.28 5.40 -26.63 -0.14 -2.43 16 10 C 0.15 2.96 2.35 -67.97 -0.16 2.80 16 11 H 0.08 1.71 7.58 -51.93 -0.39 1.31 16 12 N -0.72 -11.10 5.04 -53.84 -0.27 -11.37 16 13 C 0.52 8.44 7.53 -10.98 -0.08 8.36 16 14 O -0.53 -10.44 16.09 5.56 0.09 -10.35 16 15 C 0.02 0.25 3.39 -91.77 -0.31 -0.06 16 16 O -0.52 -6.00 13.76 -35.23 -0.48 -6.48 16 17 C -0.17 -1.86 10.09 -26.73 -0.27 -2.13 16 18 C -0.13 -1.48 10.00 -26.73 -0.27 -1.75 16 19 C -0.11 -2.32 5.50 -26.65 -0.15 -2.47 16 20 C -0.02 -0.46 5.60 -27.31 -0.15 -0.62 16 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 23 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.39 4.74 6.74 -40.82 -0.28 4.47 16 27 H 0.38 3.13 7.22 45.56 0.33 3.46 16 28 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.11 1.35 7.89 -51.93 -0.41 0.94 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.85 4.64 -51.93 -0.24 0.61 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 285.05 15.07 4.30 4.30 Total: -1.00 -30.25 285.05 -7.04 -37.30 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.35 Total: 4.27 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.34 Total: -9.39 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.43 Total: -35.80 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.40 Total: -16.84 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.68 Total: 16.16 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.25 -7.04 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181530578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.060 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds