Wall clock time and date at job start Sun Mar 29 2020 22:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99597 * 2 1 4 4 H 1.48502 * 109.46930 * 174.63144 * 3 2 1 5 5 H 1.48503 * 109.47371 * 294.63525 * 3 2 1 6 6 H 1.48504 * 109.47187 * 54.63386 * 3 2 1 7 7 C 1.37869 * 120.00144 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84734 * 164.57375 * 7 2 1 9 9 C 1.53232 * 108.53793 * 231.32761 * 8 7 2 10 10 C 1.52967 * 109.40255 * 305.37446 * 9 8 7 11 11 H 1.09001 * 109.41229 * 303.48922 * 10 9 8 12 12 N 1.46495 * 109.40871 * 183.70583 * 10 9 8 13 13 C 1.34773 * 120.00354 * 84.64853 * 12 10 9 14 14 O 1.21286 * 119.99888 * 359.97438 * 13 12 10 15 15 C 1.50699 * 120.00341 * 179.97438 * 13 12 10 16 16 H 1.09003 * 112.68602 * 295.33527 * 15 13 12 17 17 C 1.53367 * 113.39158 * 65.84729 * 15 13 12 18 18 C 1.53510 * 81.21716 * 88.43550 * 17 15 13 19 19 O 1.43350 * 113.39612 * 164.81830 * 15 13 12 20 20 C 1.52957 * 109.81505 * 63.59806 * 10 9 8 21 21 C 1.51270 * 120.85501 * 344.55584 * 7 2 1 22 22 H 0.97002 * 120.00423 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.62944 * 351.04487 * 8 7 2 24 24 H 1.09005 * 109.62123 * 111.61565 * 8 7 2 25 25 H 1.08993 * 109.48081 * 65.35378 * 9 8 7 26 26 H 1.09006 * 109.48275 * 185.39668 * 9 8 7 27 27 H 0.96999 * 119.99928 * 264.64592 * 12 10 9 28 28 H 1.08998 * 114.57273 * 201.50703 * 17 15 13 29 29 H 1.09007 * 114.56725 * 335.32002 * 17 15 13 30 30 H 1.08994 * 113.39182 * 271.59521 * 18 17 15 31 31 H 1.08995 * 113.43872 * 141.38383 * 18 17 15 32 32 H 1.08996 * 109.48033 * 176.42107 * 20 10 9 33 33 H 1.08999 * 109.48039 * 56.38284 * 20 10 9 34 34 H 1.08997 * 109.62511 * 248.38815 * 21 7 2 35 35 H 1.09002 * 109.62168 * 8.95656 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3496 0.1310 5 1 1.9911 2.3384 -1.2726 6 1 1.7947 2.4517 1.1417 7 6 2.0045 -1.1940 0.0005 8 6 3.4766 -1.2398 -0.3449 9 6 3.6905 -2.3053 -1.4253 10 6 3.1137 -3.6383 -0.9456 11 1 3.5745 -3.9119 0.0036 12 7 3.3961 -4.6768 -1.9395 13 6 4.5794 -5.3218 -1.9227 14 8 5.4106 -5.0422 -1.0849 15 6 4.8697 -6.3905 -2.9448 16 1 4.2122 -7.2545 -2.8480 17 6 4.9618 -5.8531 -4.3783 18 6 6.4280 -5.6667 -3.9634 19 8 6.2580 -6.7381 -3.0263 20 6 1.6009 -3.5115 -0.7585 21 6 1.3085 -2.4916 0.3469 22 1 -0.4851 0.8400 -0.0004 23 1 3.7948 -0.2677 -0.7213 24 1 4.0531 -1.4983 0.5434 25 1 3.1862 -1.9998 -2.3419 26 1 4.7574 -2.4189 -1.6176 27 1 2.7315 -4.9002 -2.6098 28 1 4.8021 -6.6018 -5.1542 29 1 4.4171 -4.9245 -4.5500 30 1 6.6248 -4.7048 -3.4901 31 1 7.1363 -5.8963 -4.7594 32 1 1.1868 -4.4800 -0.4783 33 1 1.1461 -3.1775 -1.6910 34 1 1.6843 -2.8657 1.2992 35 1 0.2336 -2.3235 0.4150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181585573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:43 Heat of formation + Delta-G solvation = -81.611154 kcal Electronic energy + Delta-G solvation = -17537.329678 eV Core-core repulsion = 14728.162311 eV Total energy + Delta-G solvation = -2809.167367 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.37985 -40.08933 -38.23285 -35.43172 -33.52324 -31.53014 -31.12760 -29.35585 -27.61106 -24.38332 -23.37833 -22.95259 -21.30754 -20.71343 -18.55798 -17.97285 -17.73830 -17.29906 -16.62149 -16.37806 -16.08009 -15.52047 -14.97822 -14.58305 -14.45102 -14.14787 -13.88412 -13.62082 -13.42276 -12.82943 -12.78744 -12.55174 -12.14679 -11.92964 -11.86230 -11.80136 -11.68987 -11.47573 -10.97356 -10.82734 -10.45563 -10.33822 -9.93258 -8.20931 -6.08748 1.35806 1.43108 1.49946 1.52327 2.05926 2.41075 2.89846 3.06619 3.12510 3.68903 4.02474 4.05787 4.19387 4.25980 4.45063 4.48137 4.71195 4.74340 4.80543 4.84642 4.88288 4.96850 5.03710 5.06876 5.14053 5.22998 5.25015 5.54306 5.56763 5.66763 5.73968 5.83145 6.35197 6.58650 6.93515 7.24449 7.46719 8.90037 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042971 B = 0.005887 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.446443 B = 4755.157645 C = 5019.604205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.032 3.968 3 Si 0.929 3.071 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.287 1.287 7 C -0.505 4.505 8 C -0.016 4.016 9 C -0.103 4.103 10 C 0.164 3.836 11 H 0.051 0.949 12 N -0.701 5.701 13 C 0.496 3.504 14 O -0.583 6.583 15 C 0.036 3.964 16 H 0.155 0.845 17 C -0.147 4.147 18 C 0.012 3.988 19 O -0.371 6.371 20 C -0.099 4.099 21 C 0.006 3.994 22 H 0.264 0.736 23 H 0.034 0.966 24 H 0.006 0.994 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.416 0.584 28 H 0.144 0.856 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.060 0.940 34 H -0.003 1.003 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 -10.563 -11.562 16.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.167 4.167 3 Si 0.755 3.245 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.213 1.213 7 C -0.524 4.524 8 C -0.054 4.054 9 C -0.142 4.142 10 C 0.060 3.940 11 H 0.069 0.931 12 N -0.354 5.354 13 C 0.282 3.718 14 O -0.463 6.463 15 C -0.026 4.026 16 H 0.172 0.828 17 C -0.184 4.184 18 C -0.065 4.065 19 O -0.289 6.289 20 C -0.137 4.137 21 C -0.032 4.032 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.024 0.976 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.253 0.747 28 H 0.162 0.838 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.016 0.984 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.245 -10.471 -10.850 16.320 hybrid contribution -0.121 1.188 0.289 1.228 sum 6.124 -9.283 -10.560 15.336 Atomic orbital electron populations 1.70000 1.07501 1.27562 1.50700 1.25480 0.95169 1.01430 0.94633 0.85968 0.80353 0.80459 0.77715 1.17862 1.20364 1.21324 1.20507 0.93566 0.92944 1.45415 1.19743 0.95447 0.95576 0.94645 1.21749 0.97800 0.95256 0.99418 1.20664 0.96316 0.86426 0.90573 0.93066 1.46038 1.17208 1.37951 1.34187 1.21424 0.81869 0.82721 0.85751 1.90713 1.47809 1.67224 1.40564 1.23089 0.86730 0.97799 0.94950 0.82819 1.24343 0.95448 1.04356 0.94265 1.23886 0.99817 0.90625 0.92141 1.89940 1.24244 1.48490 1.66185 1.21668 0.92708 0.98652 1.00655 1.19332 0.97590 0.93131 0.93100 0.92652 0.94741 0.97554 0.92121 0.94476 0.74694 0.83823 0.88498 0.92300 0.86615 0.92209 0.92126 0.98446 0.94691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.21 12.81 21.44 0.27 -51.94 16 2 C 0.03 1.75 5.43 84.65 0.46 2.21 16 3 Si 0.93 42.56 27.63 68.60 1.90 44.45 16 4 H -0.25 -11.26 6.14 99.48 0.61 -10.65 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.51 -26.26 5.44 -16.17 -0.09 -26.35 16 8 C -0.02 -0.75 5.47 30.11 0.16 -0.58 16 9 C -0.10 -4.17 5.50 30.66 0.17 -4.00 16 10 C 0.16 6.16 2.35 44.97 0.11 6.27 16 11 H 0.05 2.22 7.58 -2.39 -0.02 2.21 16 12 N -0.70 -19.76 5.07 -442.66 -2.25 -22.00 16 13 C 0.50 15.20 6.60 87.66 0.58 15.78 16 14 O -0.58 -24.50 16.42 12.72 0.21 -24.30 16 15 C 0.04 0.76 4.90 21.72 0.11 0.87 16 16 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.15 -2.01 8.26 30.89 0.26 -1.76 16 18 C 0.01 0.24 8.40 63.90 0.54 0.78 16 19 O -0.37 -10.02 12.30 -133.22 -1.64 -11.66 16 20 C -0.10 -3.80 5.40 30.65 0.17 -3.64 16 21 C 0.01 0.32 5.99 30.10 0.18 0.50 16 22 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 23 H 0.03 1.58 5.02 -2.39 -0.01 1.57 16 24 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 25 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.42 8.38 8.60 -92.71 -0.80 7.58 16 28 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.21 8.11 -2.38 -0.02 1.20 16 30 H 0.06 1.47 7.84 -2.39 -0.02 1.45 16 31 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.03 1.86 7.11 -2.39 -0.02 1.84 16 Total: -1.00 -69.03 284.17 1.32 -67.70 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.20 Total: 7.67 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 2.63 Total: -9.93 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.97 Total: -73.94 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.43 Total: -35.95 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.90 Total: 44.45 kcal Total: -69.03 1.32 -67.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181585573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.908 kcal (2) G-P(sol) polarization free energy of solvation -69.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds